RnoEX0072482 @ rn6
Exon Skipping
Gene
ENSRNOG00000018486 | RGD1311084
Description
similar to 1700113K14Rik protein [Source:RGD Symbol;Acc:1311084]
Coordinates
chr3:9632192-9633198:-
Coord C1 exon
chr3:9633002-9633198
Coord A exon
chr3:9632751-9632857
Coord C2 exon
chr3:9632192-9632292
Length
107 bp
Sequences
Splice sites
3' ss Seq
ACCTCCCATGTGTCCCACAGGCC
3' ss Score
10.54
5' ss Seq
TTTGTGAGT
5' ss Score
5.91
Exon sequences
Seq C1 exon
CACATGACCGGAAGGAGAAAAGTGAGAAGTGGAACCTTGATGACAGTGTGCCCCAGCTCATACGGCCTCGGTGGCACAATCGAGACTGACAGCTATCGTAACAGCTCGAAGCTAGAGATGTTTCTTCCGTCCGGCATACCTTCCACAGGATGTTCTTGCAGTTCGCCCCATCTCTTCACACCCGTGCTGAGGAAGGG
Seq A exon
GCCACACCGTGCCTGGCTTAATCTCCATCACGGAGGAGGAGACAGGTTTCCGTGTGTCAGGACCTCTTGATGGCTGAGTGAAAATCCTGCCCTCTAGCCTGATGTTT
Seq C2 exon
CAGTCTCCCACAGCACGCAGGTCCCCAAAGTGAAGACTGTGATCATTTGCAGCCCCTCTGGAGAAGGCTCAAGACCCCGCAGACGGTATTGTCCTTTCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018486-'5-6,'5-5,6-6
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTTGATGACAGTGTGCCC
R:
GGGTCTTGAGCCTTCTCCAGA
Band lengths:
242-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]