RnoINT0121970 @ rn6
Intron Retention
Gene
ENSRNOG00000018486 | RGD1311084
Description
similar to 1700113K14Rik protein [Source:RGD Symbol;Acc:1311084]
Coordinates
chr3:9632128-9635211:-
Coord C1 exon
chr3:9635119-9635211
Coord A exon
chr3:9632241-9635118
Coord C2 exon
chr3:9632128-9632240
Length
2878 bp
Sequences
Splice sites
5' ss Seq
TCCGTGAGT
5' ss Score
8.93
3' ss Seq
AAGACTGTGATCATTTGCAGCCC
3' ss Score
5.44
Exon sequences
Seq C1 exon
GGACCAACCATTGAACTGGGACGACAGTTTTAGAGAGAAGACTACCCTGGGGCTCCCAAAAGGTGAATTCGTCAGAGCCAAAAAGGCCCATCC
Seq A exon
GTGAGTAGTAGCTGTTGTGAGTACACGCGTGCTAGAGTTTTGTGGCATTAACGCTCTCCTTCCACCTTCACGTGGGCTTGGGGGATGGAAGAGAGGTCATCAGGGTTGCCTGACAGCACTATCTATTGAGCCATTCTGTCATTTCCCCACGCTGTGAGTTATGGGAGCAGAAACAGGAAGGCATCCCTTCGCTCCCTCGTTTCCAGGCACTCACTAATGGATTTATCATGTATCCATCCATCCACTCACCTAGCCATCCTTGAGCGCACCTACCCCTTACTCACAACCAGGTCTTCTATAAGCAACTGTGAATCTCTCCATCCGTCTATCCATCAAAGCATCTAACGGGCCATGAACTCGAACTGCCAGACTGTCAGATAGCCAGTCTTCTGTCTATTCTCAAATCCCCTCTGGTTATAGCTACCTGGTAGCTACCCTTTCATTCACTTAAAAACCCGGGATGCCAATCACTTCCCCCTAGAAGTAAATCCACTCACAAGCTTACATGTTTACCTGCATAACCATTCAGCTTCCTACCCCAAGATTCAGCCATTCAGCTGAGATCCAGACAGGAATCTACCTGCTGCTGAACCCTTCTCTTATCTCAAAGCATGACCCATGTCTGAAGTTTTATACTGCGTATCAAATACTAGAGGAACAGACAATGAGAGATAGAACCAAGAAAGATTCCTGACATTAACCACACTAATGTTTAGTTTCCCTGAACTTGGATCATGGAGAGCTCTTAATAGAGAAGGGAAGGAAACAATAGGTTTAAACAGGCTGGAGCACAAATGTAGGGTGAAGGCAACTATCTGGGGGTTTGAAGACTAGAAAGTTGGGTGTGGTGGTGCACACTTTTCATCCCAGCACTCAGGAGGCTTAGGTAAGCAACTCCATGAGTCAGACAGAGGCCAGCCTGATCTACATAGTGATTCCAGAACAGCCAGGGCTACAAAGTGAGACCCTGTCTCAATCAATCAATCAGCTAATTGATTGATTGATTGATTGATTGATTGATTGATTGATTAAAGGAAGGACCAGATGGACCAGGGAACATGCATACAGAGCAAGCATACCATTACTGTTCCATCTGTATCCATGGCAGACATTACTAATGGATCACTGCACACTTCTCTGTGAGCCTCAGAACCCTTCCTGACACAGTTTTTTAGGATCAGAGTAGAGACTTAGGATGGAGCAATGCCTTAGCAGTTAAGAACACTGGTTGCACTTTTAGAGGACCCAGGCTCAATTCTCTGCATCCACATGGCAGCTCACAGCTGTTTGTAACACCAGCTGTAGGGGATTCGACACCCTCGCACAGACATACATGCAGACAAAACACTAAAATAAATTGCTAAAAAAGTGGAGACTAGAGTTGGACACTTATTTGTATGTAACATTCCTTCAGTGCATTTGATTGCTTCTGTGAGTGATCTTCCCCAGGAAGCATGGTGTCACACTGGCAGGCAGAACCTAGGAGATGTCTAAGCCTCGCCCGCCCGCCGTGTGGCCAGGACAGAGCTGAGGTTCTGCTTGCATACTACTGTGACCCTAACTAAGACCAACGCCTATAGTCAAGTTCCCGGCTGCAGGGCTCTTTGGTGGACAATGAGAAACACACCCTATGCATCCACAAAGAGATGCCACACGATCAGCGGGTATGGGTGTGTAAATACGTGTGCCCAAGGTGATGGTGCAATGGGGCCTTTGTGAATGATCAAGTAACCAGGCTGGCAGCCCAGACCCTGAGGGAGAAATGAACAGGTCTAACATTTTTGTTACATACAAAGATAACACGCCCTTTACGGAGCACAACCCCATTGACAGGCCCTGTTCTAGGTGCCTCCCCACACGGGGTACTCCACTCTCCCAGTTCCTGTGACTGACGGCGGAATGATCCCGCCTATAACACAGCACATGACCGGAAGGAGAAAAGTGAGAAGTGGAACCTTGATGACAGTGTGCCCCAGCTCATACGGCCTCGGTGGCACAATCGAGACTGACAGCTATCGTAACAGCTCGAAGCTAGAGATGTTTCTTCCGTCCGGCATACCTTCCACAGGATGTTCTTGCAGTTCGCCCCATCTCTTCACACCCGTGCTGAGGAAGGGGTGGGGCACCATAATTTCCTTATTTTTATTTCTATCTGCTTATTTGTCAAATCCGTAGCCCAGGCTGGCCTCACACTCGCTAGGTAGCCAAGGATGACCTTGAACTCCTGATCTTTTTGCCTCCACCTCCCATGTGTCCCACAGGCCACACCGTGCCTGGCTTAATCTCCATCACGGAGGAGGAGACAGGTTTCCGTGTGTCAGGACCTCTTGATGGCTGAGTGAAAATCCTGCCCTCTAGCCTGATGTTTGTGAGTGGCAGCTGTGGGCCAGACATCTCTGGGCCTCAGTTTCCTCACTTGTAATTAGGATAGTGGGGCTTTATGGGAAATGCTGAGGTTTGGTGGGACAAGACATGTCACATTATGGCCGGAACAAGCACCTGGAAAAAGGCCATCTGATGTGACTAGTAGAGCCCTGCCACCAACCAAAATCTTTTGAAGATTTATATTTTATTTTTATGTGTATATTTGGGTGGGTGCAGGGTGTTCCCATGAGCCCTGGTGTCTGCAGAGGCCAGAAGAGGGTGTCAGATTGCCCCAGGAGTGGAAGTCACAGGTGGTTGTAAGCCAATGATGTGGGTGCTAGAACCAAATCCAGGTCCTCTGGGAGGGCAGGAATACACTCTTAATGGCTGAGCCATCTCTCCAAGCCCTGGCTAAGATCTTACTAGGAGCCTGGGCTCCCCCGCCCTCTCATTTCCCCTCAGCAGTCTCCCACAGCACGCAGGTCCCCAAAGTGAAGACTGTGATCATTTGCAG
Seq C2 exon
CCCCTCTGGAGAAGGCTCAAGACCCCGCAGACGGTATTGTCCTTTCCGGGTGCGATTCGCAGACGAGACCTTGCAGGATACAGCACTCCGGTACTGGGAACGTAACCGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018486:ENSRNOT00000024953:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.266 A=NA C2=0.231
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]