MmuINT0097945 @ mm9
Intron Retention
Gene
ENSMUSG00000041921 | Metap1d
Description
methionyl aminopeptidase type 1D (mitochondrial) [Source:MGI Symbol;Acc:MGI:1913809]
Coordinates
chr2:71347798-71349617:+
Coord C1 exon
chr2:71347798-71347947
Coord A exon
chr2:71347948-71349468
Coord C2 exon
chr2:71349469-71349617
Length
1521 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGTA
5' ss Score
-0.15
3' ss Seq
CACTTTATTTCCTGTTTCAGGTT
3' ss Score
11.48
Exon sequences
Seq C1 exon
CGCATAAAGAAGCCAGACTACGTGACGACAGGCATTGTGCCGGACTGGGGAGACAGCATAGAAGTGAAGGATGAAGATCAGATTCAAGGGCTTCGTGAGGCTTGTCGGCTGGCGAGACACGTCCTCCTCCTGGCTGGGAAGAGTTTAAAG
Seq A exon
GTGGTATCTTACCAAGCCTCAGCATGACTTACATATGGGCTTTCTCTTCCGTTTCCTTAGCTCCCCTCTTACACTCATCTGTTAATAATTTAATTTTTTAAAAAGTAAAGCCTTAAGATGGGAAAAGGGGATTTTACTATGTGCTTACTCAAGAAATAATGTAAACTTCTAAATTTGATCATAACTGGCAGGATTCTAGAGACAGTTGGCTGACTCAGCCTATCCGAGGGGATCTATGGCAGAGGACTTTGGCTTTGACACCTTGCCTCTGCCAGTTTTCTGCTTCTGTTTCCTACATCACTACCTCCATGTGCTGACGTGGTCCTACCCTGTAGCCTGCCTCTTCTTTTCTTGTGTCCTTCAAAGAAAGGCTAGGCCTAGTCCACAAATCCTCAATAATATGGCAAGATCAATCAATCAATCAATCAATCAATCTATCTATCGCTCTATCTATCTATCTATCTATGATATATATACATATACATATACATATACATATACATATACATATACATATACATATACATATACATATACATATACATATATATATATGTCTGTCACTTCTTTCCGAATAACCCAAAACATCCTGCCATTTACAGTTCATAAAGAAAATATAAATGTAGTTTCAAAGTGGGGGGCTCAAGGGTGAGTTTGCTTACTATGTCGTCTGTGTAACCAACCTGTTATCCAGACGACAACCTGTTATTGTGGTGCGGTTTTATGGAAATATTCTTCATGTGCTTATGAAACTCAGTTTCCAAACTCAGGGTATATAGTTGAACAGCAGAACATTACCTAGCATAGGGGAGGCCCCAGGATCAGTCTCCAACAATGCAAAGCAAAAACAAAACAAGACCCCTCAATCTCAGTTATCTTTGTTGGAAAATAATTGGGTCTTTTCTAGTACAGGGAAAAAAATGTTAAAAAACATTTATCTAGGCATGAAAGAAGTCAAACTAATTGAAAATAAAATCTCTATAAAAGATGTCGGAGACTAAGTTTTTAAAATGATGGTCCATCACCTCTCTGCTGTTGCTGCAAAGCTCGCCCATGCAATATTTCAACAAGATACAAAGGTGTGAGTAAGCCTTCCTTTCTGGCTCCTCGGGGCCAGCATTCTGCTGGGACACTTACTTGTATGCTCCTGTTAGCCAGAGCTCTGACCCTTGAGGGACAGGAAGGAATTGATGAGAGATGGATTGTTGAGATCAGGTTAACAGGGACTCACCATTAACGACTCTCTCTATTCCCTAATGATATGCATATAACACCGCCATATACCCGAAGGGTCAATAGGACTTGCCCTATTCCTTAATGGTATATAGCACCACCCTTTACTCAAATCAACATCAAAAGAGCTTGGTTGAGGACGGTGGTGAGATCACAAGTAATTAGTGTTATCCTCTGAATCCATCATGGTTATATGGTCTCACCTTGGCAGCGCCGTTGTTGTGGGCATAGTCAGTAGGCAAAGGAAATGTCTTCAGCTGTTGCTGCACACTTTATTTCCTGTTTCAG
Seq C2 exon
GTTGACATGACAACTGAAGAGATAGATGCGCTTGTTCATTGGGAAATCATCAGGCATGACGCATATCCCTCACCTCTGGGCTATGGACGCTTTCCAAAATCTGTTTGCACCTCTGTAAACAACGTGCTCTGTCATGGCATTCCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041921-Metap1d:NM_025633:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0055719=Peptidase_M24=PU(13.3=42.0)
A:
NA
C2:
PF0055719=Peptidase_M24=FE(21.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCATAAAGAAGCCAGACTACGT
R:
AGGAATGCCATGACAGAGCAC
Band lengths:
294-1815
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: