DreINT0095295 @ danRer10
Intron Retention
Gene
ENSDARG00000019715 | metap1d
Description
methionyl aminopeptidase type 1D (mitochondrial) [Source:ZFIN;Acc:ZDB-GENE-050522-71]
Coordinates
chr1:30152170-30152580:+
Coord C1 exon
chr1:30152170-30152319
Coord A exon
chr1:30152320-30152431
Coord C2 exon
chr1:30152432-30152580
Length
112 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
3' ss Seq
CTATATTGTTTGTTTCTCAGGTT
3' ss Score
8.88
Exon sequences
Seq C1 exon
CACATTCAGAGGCCTGACTACGTGTCATCCAGCAAAGTGCCTGAATGGCCAGATTACATTGAGATTAAAGATGAAGAGCAGATCCAGGGATTAAGACGAGCGTGTCAACTAGCCAGACACATACTGCTGCTGACAGGAAACAGTTTGAAG
Seq A exon
GTAAACTCTACACTTAGCTGAAATCCGAGACCGTAATGTTGAATGAGCTTGATGTGACTTGTCTTTTGAATTGTTATTTGCAGACACTGTCACTATATTGTTTGTTTCTCAG
Seq C2 exon
GTTGGTATGACGACAGATGAAATAGACTTTATAGTCCATCAAGAAGCGATTCGTCACAATGGCTACCCTTCTCCCTTACATTATGGGGGCTTTCCGAAGTCGGTCTGTACCTCTGTGAACAATGTTGTATGTCACGGCATTCCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019715:ENSDART00000022841:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0055719=Peptidase_M24=PU(25.9=42.0)
A:
NA
C2:
PF0055719=Peptidase_M24=FE(21.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAGGCCTGACTACGTGTC
R:
GACTTCGGAAAGCCCCCATAA
Band lengths:
246-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]