RnoINT0091641 @ rn6
Intron Retention
Gene
ENSRNOG00000061587 | Metap1d
Description
methionyl aminopeptidase type 1D (mitochondrial) [Source:RGD Symbol;Acc:1307413]
Coordinates
chr3:58141409-58146481:+
Coord C1 exon
chr3:58141409-58141558
Coord A exon
chr3:58141559-58146332
Coord C2 exon
chr3:58146333-58146481
Length
4774 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGCG
5' ss Score
2.19
3' ss Seq
CACTTCTCTCCCTGTTCCAGGTT
3' ss Score
11.1
Exon sequences
Seq C1 exon
CACATAAAGAAGCCAGACTATGTGACGACAGGCATTGTGCCCGACTGGGGAGACAGCATAGAAGTTAAAAATGAAGATCAGATTCAAGGGCTTCGTGAGGCTTGTCGGCTGGCGCGGCACGTCCTCCTCCTGGCTGGGAAGAGTTTAAAG
Seq A exon
GTGGCGTCTCACCAAGCCTCAGTGTGAGATTCATATGGGCTTTCTCTCGCCTTCCCTTAACTTCCGCTCATTCATCTGTTAATTGATTTTTTTTTACCAAGTTAAGCTTAAGATGGGAAAAGAGGGTTTTACTATGTGTTTAGTTCAGAATCATAGTAACTGTAATTCGATCATAACTGCAGGATCCAGAGATAATTTGGCCGGACTCGGGGCCTATCCAAGATGACCTATGCCAGAGAAATGGTTTGCCCTTTTGCCTCTGCCAGCGTTTTGGGTATTTTTTTTGGAGGTGTTGCGTCTATGTTGTGTCTGCCCTCTTTCCTTTATAAGGTCCTTTTAGATGCTAGCGGCCATAGTCCACGAAAACCAACTCAGGTAATATGGCAAGATCTGTTCTGCTCTGTCTGTCTGTCTGGTCGCTGTCTGGTCTTGAATGGTATATGTATATTTATTTACTTATATTCTTGCTATGAGAGTCACTGTCTCTCAGAATAACCCAAAACATCCTGTCTACATTCCTAAGAGATATAATGTTAGTTCAAAGTGGGGACTCAATGGGTGATTTTTTGGGTTATTCTGGAGAAGTTGAATCCATAGCAAGAATATATATGTTAATCAAGTATATATGTACACGTATACCATTCATAGAACAGGACAGACAGAAGACAAGACAGACAGACAGACAGATTTGCCATATTACTGTGTTTTGTGGACTAGGCTAGCCTTTCTTTGAGGAACACTTATAACAGGAAGAGGCAGATACAACATGAGGACACAACACCTTCAACACAGTGAGGTAATAACGTAGGAACGAGGCAAGAACGCTGGCTGAGGCCAAAGGGGCAAAGCCATTTCTACTGCCATAGGGTCATCTTGGATAGGCCGGATCGGCCAATTTATCTCTAGGGATCCTGCCAGTTATGATCGAATTTACAAGTTTACATATTTCTTGAATTAACACATAGTAAACCTCTTTTCCCATATCTTAAGGCTTAACTTGGTTAAAAAAAAATCAAATTATATGAACAGATGAATGAGGGAGAGTTAAGGGAAGGGGGAGAGAAAGCCCTCATATGTAAGTCACACTGAGGCTTGGTGAGACGCCACCTTTAAATCTTCCCAGCCAGGAGGAGGACGTGCCGCGCCAGCGACAAGCCTCACGAAGCCCTTGAATCTGATCTCTTTTTTACTTCTATGCTGTCTCCCCAGCTCGGGCACAATGCCTGTCGTCACATAGTCTGGGCTTCTTTATGTGCTTGAGGGAAAAGGGATTGAAAACGGGAGATCAGAACCCAGCAACCGCGACAATGGAATCTTTTTTTCAGACACAGCCTCCTACTTCATGGAGTTCTGGCCCTTCCCTGCAGAAGCACCGACCTCAAAGCCGGCACAACAGACCCTCCAAGGCTACCCCCGGTTCCTTCCCCTGCCCTTTTGAACTTAACATGGCCCTGGTGGTGGCTGCTCTGGATGGTCTGTTAAACCCCACCAGGCTTTGAGTTGGGTTCAGCTGAAGCAGATTTCTGGTAAAAACAAACAGCAGTTTTCTGTTCATTACTACGCACAAGCCCCATTAGAAGCACGCCCAGAGATGAAAAAGGGCAAGTTCCCAACCCGCCCACAATGGCCTACTTAAGATGCGCTCTCAATTCTTCACACCATGATAAAATGTGTGCAAAGGAGAGTTCTCAACACCGTCTGCTACTGAGTCTATGTGGAAGGGTGTCAGGTTCATGGGCTCTACCATGCACAGTTTCTTACAGTAGGTAGGCCTGACAACCGAGTACCAGAGCCAAAAATAACAGCTGTCTTTCTTTGACCATCCTTCTCTGAGGGCCATAAGTCACCTAGAATGTTTCCATCCTTTATCAAGAAGAAACGAGTCCTCTCCTAACTCTACGCCACAACCCTGATCCCTCCTGTGGGCTGGTTCTCAGGAAGCCGGCTGGTGGTTTTTGTAAGGTAACACTTATACACAGTCTCTGTGTTCCCTAAGGTCTGCAGGGCCTTCCTGGCCAGCTGTAGCGATGCTGGCTGACCTTACTACAGTATACGGTACACAGAAGTTTGGCAGGACCCGAGGTTGGGGCTCTTGTGTTTGTGAAGTTGCCATGACAGACCTTAGGATTTTCTCTTATTCCACTGATCAGAAGGGATTTTGTCCTATCCATTTATGCCCGCTTTTTGGTTTGTTTGTTTGCTGAGACGGTTTCTATGTGTATGCCTGGTAGTTCAAAGAACTTGTTCGTAGACCAAGGTGCTTCCAATCAGAGATTTGCACTGGCCTCTGCCTCACAATGTGCTGGGGACAAATGTCCAGCTCCTTTGTTTTTGGAGACTAAGCCTCTCACCTGAACCTGGAGCTCATAGGTGACCAAAAGCCTCAGGGCGCCTCCTGTGTCCACCTCCGAATTCCCCAGCCTAGAATTTAAGCACCCCCTTTTGCACTTACTCAGGGGCGCTATGTGGGTCTGATGGGGTCTGAGCTAAGGTCGCAACTCTGTGGTGGCCCAAAACACTACGGATAGGCCATCTCTCCAGCTCAAAGAGCGGCTTTTCTTACTCTGGGAATAGAATGGCCTGGCTTACTGCAGCTGAGCCCTGGAGGGGCCTCCTCCTGTCCTATAATTCCCACACCAACCTACATGGTTCCCCAAGTCTCCTCCCAACAAGGCTTAATGCTCTCATTTCTGTTCTGTTGCTCAGCTTTGGTTACAACTTACAGGCTGGGGAGGTGCTGGGTTGTCTCGAAACGGACTAAAAGCAAACACAGACACATTTCCTTTATCTACAGGTGTGTGTTGGGTGTGTGTGGGTGTGTGTGTGTGTGTGTGTGTGTGTTGACGCAATCAAAGGTGTATGATGTGTGCAGAGGTAATGGAGGCCACAGGGACAAATTTCTCAATGTCTTCCTCAATTGGGCCCTGCATGTTTATATTTTTTTGAGACAGGGTCTCTTCACTCAATCTGGAGCCTCACTGGTTTGAACCAGACGTCTGATCAAGGATCCTTAGGGATCGACCNNNNNNNNNNNNNNNNNNNNNNNNNGTGTGACTTACATATGGGCTTTCTCTTTCCCCTTTCCCTGTAACTCTCCCTCATTCATCTGTTAATAATTATTGATTTTTTTTTAACCAGTTAAGCCTGTAAGATGCGGAAAGAGAGGTTTACTATGTGTATTCAAGAACATATGTAATGTAAATTCGATCATAACTGGCAGGATCCTAGAGATAATTGGCCGACTCGGCTATCCAAGATGACCTATGGCAGAGAAATGGCTTTGCCCTTTGCCTCTGCCAGCGTTCTGCCTCTGTTTCCTACGTTATTACCTCCCTGTGTTGAAGGTGTTGGTCCTATGTTGTAGTCTGCCTCTTCCTCTTATAAGTGTCCTTCAAAGAAAGGCTAGGCCTAGTCCACAAAACCACAGTAATATGGCAAGATCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTATGAATGGTATATGTAATATATATTATACATATATATTCTTGCTATGAGAGTCACTTCTCTCAGAATAACCCAAAACATCCTGCCATCTACATTCCTCAAGAAGATATAAATGTAGTTTCAAAGTGGGGACTCAATGGTGAATTTGCTTACTATGTCATCTGTGTACCCAACCTGTTATAGCAACATAACCAAGAGTAAGGAGAATATGAAGTAACACAGAAAATCACTAAGGGAGTCGTTAGGGACGACTTTGGCATAGAGCTTTGTTTGTGGTGTGGTTTTATGGAGATTCTTCGTGTGCTTGTGAAACTGGGTTCCTGGGCTTGGGGTATAGCCCAACAACAGAACACTTGCTGCAAAGCTCGCCCATGTAGTGTTTCAACAAGCTACAAAGGTGTGGTTAAAGCTTCCTTTCTGGCTGCCCTCAGCCAGCATTCTGCTGGTACACTTATTTGTACGCTCCTGTTAGCCAGAGCTCTGACCCTTGAGGAAGAGGAAGGACTTGATGGAAGATGTATTGTTGAAATCAGGCTAACAGGGGCCCATCATTAACGACTCCCCCCATTCCCCCATGGTACATAACACCACCATACACCCAAAGGGTCAATACGACCCCTCCATTCCCCCATGGTATATAACACTACCATACACCCAAAGGATCAATACGATCCCCCCATTCCCCAATGGTACATAACACTACCATAAACCCAAAGGATCAATACGACCCCCCCCATTCCCCAATGGTACATAACACCACCATACACCCAAAGGTTCAATATGACCCCACCCCATTCCCCAGTGGTATACAACACTACCATACACCCAAAGGTTCTATACGATCCCCCCATTCCCCCATGGTGTATAACACCACCATACACCCAAAGGTTCAATACGACCCCCCCCATTCCCCAATGGTACATAACNNNNNNCATACACCCAAAGGTTCAATACGACTCCCCCTATTCCCCAATGGTATATAATACTACCATACACCCAAAGGATCAATACGATCCCCCCATTCCTCCATGATATATAACACTACCATATACCCAAAGGATCAATACGACCCCCACCCCATTCCCCCATGGTACATAACACCACCATACACTCAAATGAGCATCAAAAGAGCTTGCTTGAGGATGGTGGCCAGAGTCATGAGTAATTAGTGTCATCCCGTGAATTCATCACGGTGAGCTTATCCAGTCTCACCTTGGCAGTGCCGTTGTCGTGGACACAGTCAATAGGCAGAGTAAACGTCTTCAACTGTCGCTGCACACTTCTCTCCCTGTTCCAG
Seq C2 exon
GTTGGCATGACAACTGAAGAGATAGATGCACTAGTTCACCGGGAAATCATCAGGCGTGACGCATATCCCTCACCTCTGGGCTATGGCCGCTTTCCAAAATCTGTCTGCACCTCTGTAAACAATGTGCTCTGTCATGGCATTCCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061587:ENSRNOT00000084797:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0055719=Peptidase_M24=PU(9.2=42.0)
A:
NA
C2:
PF0055719=Peptidase_M24=FE(21.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]