MmuINT0072145 @ mm9
Intron Retention
Gene
ENSMUSG00000026754 | Golga1
Description
golgi autoantigen, golgin subfamily a, 1 [Source:MGI Symbol;Acc:MGI:1924149]
Coordinates
chr2:38872023-38874596:-
Coord C1 exon
chr2:38874510-38874596
Coord A exon
chr2:38874010-38874509
Coord C2 exon
chr2:38872023-38874009
Length
500 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CTTTTCTGTTCCAAATGCAGATG
3' ss Score
10.09
Exon sequences
Seq C1 exon
GCTTTTCATCTCATAAAAGCAGTGTCAGTGCTGCTGAATTTCTCACAAGAAGAGGAGAATATGCTCAAAGAGACTCTGGAATATAAG
Seq A exon
GTGAGTTTCTGGGGTCTGCTTCCATTGCTGGACGAAGCTGATCAGGCAGTTGAAAGAACATTCTTTAGCCTAATGTTCTTTCCTTTGTCACCACCAGACTTTGTTCATCACAGCATTTCATTGATGGCACTTTTAGTTATGACTGGCACCTACACTTAACATTTTCCCCCCTGGGCTAGGCTGTAGCTCAGTGGTAAAGTGCTGCCTATTATGAGCAAAGTCTCAGATTGATCAACAGCACAGCAAACCCCATGAAATTGCTAAGGCACCTGCATAAATGCTTAAATGGAGTGGGAGGAACCTCTTACAGTTCACTGTCTTCTCATCAACTCTGTCTTCCTACAGTTTCTTTTCCTAAATCTGAGCTCTTGGCCCTGCACATTGGAGGCTTTTTGGTTACTCCTCTTACCAACTGGGATAACTAAAAGGCGAGGGCCATTTCTGCTCCCACTGCATTTAGTTGTTTCTCAGCTCAGAAGCCTTTTCTGTTCCAAATGCAG
Seq C2 exon
ATGTCTTGGTTTGGATCCAAACCAACTCCCAAGGGCAGCATCCGGCCATCTATCTCCAACCCTCGGATACCATGGTCCTAGAGCCATCCAAGGATAGAGCTACATGGGCTGACACTCTTCCTGTGAAAAGAATACTGACACACCAGACTGGGTGGGTTTATACATCGATGTAACTACAGTATTTTGTACAAGTGTCTAGACAGTTTACAAGACTTTAGGCCCACCTCCCTGTAGACTGATAATGAACTTCAAAGGGAGCTAATTCTATCATAATGGTTATTAAATGAGAAGGAATCCTGGGCACTGCCCAGATTTCCACAGTGCTGCTAATATCCCAGCTCTGGCCAGCTGCAACTGAGTCCTCTATCTTTTAACATTAGCACTTAAAGATGACGTGATTGGCATGTCAGGTGAAAATTAATTATGAAGCAGAGGTAACAGGACTGAAGGTGGAGATAGTCCTTTCATAAAAAGCCAACTCAAGGGTGGTCTTTGGAGTCCCCTTCCACTAGCATGTTTGGGTTTTCATGCACTGTTGCCTCTCAAGAAAGTATCATTACACTTTGTTTCCCCAGCCACCTAGAACTTGAGATGTGTCCATCTCATAGGTTACGGGGCCAGTGTGGACTGATGAGTATGCAACTTTCCAGTCCTGAGAAAACTAGCAAGCAGACGGAATGATCTCTCCGTATAGCACCAAATACACTCAATTGCCTTCTTAATGAATGTACTCGTCTTGGATGGGTTGCTGGTAAACCATTTTAAAACTATTTTTATAGCAAAAGTTCTTCGCTATTCTAAACATGTCTTCTGTATTATAAAATCCATTTAAAGATGAAAATCAGAGCTTCAAGTCTTTCTAGTGCCAGGACATATGCCCCTTTGTAATTTTTCTTGCCTTCTGTGGTACCTGCTCTCTAAAGCAGTAGTTTCTCCAGCTTTGCTCTGAATTCTCTCATATTACCACTGAGCAAATGCCAGTCACACTTCTACTTAAGAATAACCTGCTGAATTCAATGGAAGCAGGCTGTCCCTCTCCTACCCTCGTTATTTCTGATGACACTACATTGATATATAGCACTCAGGCAGCCCAGCTGACTTCCACACTTGATAGCACACATGCCTCCGTTTTAGCTGATAGAAACTTACATTCATTTTTACACTTGATCTGGATAAGCCACATCAGATCCCAAGGGAAGCCATTTGATTGAGTTTGATGAAAGTGTTTCACTAGCGAGTAAGCCAATAATTGGAGCTTTTAAAGTTACCATGTATCTAGGTAAATTTATGTTCTTCAGCTTAAAGGCAACATATGCATGTACATGCATATAATGTGTCATACAGAAATCGAAGTTTTGTAGCATTTGCCTTCTAAGTCTAAATCAGGATGGCATTGCTTTGGCTGTGGCTCTTCTTACAGGAGTTTCCCTTTAGGGTGCCACTTCCCATTTAGTGGGGACATGAAACTAGAGCCCCACTGTTATGTGATTTTACAGAGGAAGATGTAGCTTCTCCAAGTAGGATTCCTTCCCTTCCTCCTGTCCCAGGTAAGAAACCCCAGAGGACTGAACAGTCCACAGCCCTCCAGAAGCAGCTGCAGTTCCAGCTTTGGAAGCCCTTTCTACACCTTAGGTTTCTCAGGCCTTTGAGCTGGTATGTCCGTCTGTCTATCTGTCTCTCTCACACTCGAGCACACAGACACCCCTGCCTGCAGGTTGTGTTGTGGCTGTGGGGCCCACTCGTTTAGAATGGCTTTCCTGCTGCATGTTGAGCTCCTCCAGCACTAGGAGAGTGCAGTAGCTATTCCAAGTGGCTTCATGCACTTTACTTCCATAAACTTTATAAGAGACAGTGTGTAGCCCTTTATAGATGAGCACTGGACTGTGATCTTACTACCAATGTAAATAGGGATAGTATTATCTAAAAACTGCTGTAGCAGAATTATTTGTGGTGCAATACTTTTTGATTAAAGCTCTTCAAGATGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026754-Golga1:NM_029793:22
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.231
Domain overlap (PFAM):
C1:
PF0146515=GRIP=PD(48.9=75.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTCAAAGAGACTCTGGAAT
R:
AGCAGCACTGTGGAAATCTGG
Band lengths:
355-855
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: