BtaINT0067838 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015286 | GOLGA1
Description
golgin A1 [Source:HGNC Symbol;Acc:HGNC:4424]
Coordinates
chr11:95869270-95870697:-
Coord C1 exon
chr11:95870611-95870697
Coord A exon
chr11:95870166-95870610
Coord C2 exon
chr11:95869270-95870165
Length
445 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
CTTTTTTGTTTCAAACACAGATG
3' ss Score
7.52
Exon sequences
Seq C1 exon
GCTTTTCATCTTATAAAAGCTGTGTCAGTGTTGCTGAACTTTTCACAAGAGGAGGAGAACATGCTCAAAGAAACCCTGGAGTATAAG
Seq A exon
GTAGGGTTTCCTGGTCTGCTGTCTGCCTTCCAAAAACTAGTCAGTCGTCCCAGCCCTGGCAGATGAGAGCAGTGCACGGCTGCATCATTAGCTTGGAAGGTGCCTCTGGATGATGAACTTGATGGGGCAGTGCTGACTGAGGACACGCTCTGTGCCCACAGGTCTCTGCTGTACTTGACTAACAGGCCTGTGACAGCACTCCCATTGGTATCACTTCATCAACAGCTCAGGTCTGGCTAGCACCCAGACTTTTTAAAAAAGTGAAAAATACCCATAAAGTACCTGCATAAAAGCTGTAGTAGAAAACACTGAGCTGCTCCCACCAGAGTCAGGATCGTGGAGGGGAGGAAGGGCCAGGAGGGCAGGATGGGAGGGGAATCTTTCAGCTCCTTCTGCACCCAGTCCTGGCTCCTCATCTCTGGAGCCTTTTTTGTTTCAAACACAG
Seq C2 exon
ATGTCGTGGTTTGGGTCCAAGCCAGCTCCCAAGGGCAGCATCCGGCCGTCTATCTCCAACCCTCGGACACCGTGGTCCTAGGTGGCACTACCCAGGGATGGGGGCTCCAAGGGCTGACACTTTTTCTGTGAAAAGAACACTGACACACCACAGTCCTGGTGGGTTTTTAATCACTGTAACTGCAGTATTTTGTACAAGCGTCTGAACATTGTTTACAAGACTTAAGGCCCACTCCTGCAGACTGATACGAATCTCAGGAGGTCGCTGATCCTGACATCCTGGTTTCCGGAGAGCCCTGGCACAACCCACATTGCCACAGTGCTGCTAAAATCCCAGCTCTGGCCAGCACCCACCTGCACCTGAATCTTCTTTCAGTTAGCACTTAAAGCTGAAGCCCTCAGCCTGTGTCAAGAGGGGAGGCAGCCAATCCATCATGTGGTGATGATGCTGGACAGACAGGCCTTCAAAACGGTGCCCAGGAGGGCAGACCCACCTGCTTCTGCCGTGAAGAGCCAACTCAGTGAGGCTGGCTTTTTTCAGCTCCCTTTCCCTGTTTGTAAGTTTGGGTTCAGGTGAGTTAGAAGAGGCTTTTGAGCGCTTCCGCCCAAGGAAACATTATTTCACCTTGCTACTCAGACATCCTAGAACTTCAGATGTGTCCATCTCTAAGGTACTCTGGGGCCAGTGTGGATTAATGAATATATGCACCTTTCTGACAGTATCTCATTTTACTGAAGAAAACTAGCAAATGTGTAAAAAGATTCTTAGTACCAAATACACTCAATTGCCTTTTTAATGAATGTACTTGTGGTGGATAGGTTGCTGGTAAACCATTTTAAACTATTTTTTATAGCTAAAGTTCCTCGCTATTATAAACATGTCTTCTGTATTATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015286:ENSBTAT00000020327:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.423
Domain overlap (PFAM):
C1:
PF0146515=GRIP=PD(48.9=75.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCTGTGTCAGTGTTGCTG
R:
GGATCAGCGACCTCCTGAGAT
Band lengths:
343-788
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development