RnoINT0066243 @ rn6
Intron Retention
Gene
ENSRNOG00000014493 | Golga1
Description
golgin A1 [Source:RGD Symbol;Acc:1311305]
Coordinates
chr3:23311578-23312314:-
Coord C1 exon
chr3:23312228-23312314
Coord A exon
chr3:23311729-23312227
Coord C2 exon
chr3:23311578-23311728
Length
499 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CTTTTCTGTTTCAAATGCAGATG
3' ss Score
10.77
Exon sequences
Seq C1 exon
GCTTTTCATCTCATAAAAGCAGTGTCAGTGCTGCTGAATTTCTCACAAGAAGAGGAGAATATGCTCAAAGAGACTCTGGAATATAAG
Seq A exon
GTGAGTTTCCCGAGTCTGCTGTTTCCATTGCTGGATGAAGCTGATAAGGCAGTTGAAAGAACATTCTTTAGCCTAATGTTCTTTCCATTGTCACCACCAGATTTTGTTCATCACAGCATCTCATTGTTGGCACTTTCTCAGCTGCTCCAGTTCTGGCTAGCACCTACACTTAACATTTTTTCCCCCTGGGCTAGGGTGTAGCTCAGCGGTAAAGTGCTTGCCTCGTAACATGCAAAGTCTCAGACAGCACAACAGACCCCATGAAATTGCTAAGGCATCTGCATAAATGCTGTAATTGAGTGGGAGAAACCTCCTACAGTTCTACTGTCTTATTAACTCTTTCTACAGTTTCTTTCCCTAAATCTGAGCTCTTGATCATGCACATTGAAGGCTTTTTGGTTATTCCTCTTACCACCTGGGAAAACTAAAAAGGGCCGTTTCTGTTCCCACTGCATGTAGTTGCCTCTCAGCTCAGAAGCCTTTTCTGTTTCAAATGCAG
Seq C2 exon
ATGTCTTGGTTTGGATCCAAACCAGCTCCCAAGGGCAGCATCCGGCCATCTATCTCCAACCCTCGGATACCATGGTCCTAGACCCACCCAAGGATAGAGCTACGTGGGCTGACACTCTTCCTATGAAAAGAATACTGACACAGCAGACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014493:ENSRNOT00000019703:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.154
Domain overlap (PFAM):
C1:
PF0146515=GRIP=PD(48.9=75.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTTCATCTCATAAAAGCAGTGT
R:
CCAGTCTGCTGTGTCAGTATTCT
Band lengths:
238-737
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]