RnoEX0039164 @ rn6
Exon Skipping
Gene
ENSRNOG00000014493 | Golga1
Description
golgin A1 [Source:RGD Symbol;Acc:1311305]
Coordinates
chr3:23311578-23312881:-
Coord C1 exon
chr3:23312711-23312881
Coord A exon
chr3:23312228-23312314
Coord C2 exon
chr3:23311578-23311728
Length
87 bp
Sequences
Splice sites
3' ss Seq
AAAAGTGGGTTTTGTTTCAGGCT
3' ss Score
5.37
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
AAAATCAAACCTGACAATGAGCTTTTTGAGGTCCGGGAGAAGACAGGCCCTGAGATACCAAATATGGCCCCTTCTGTCACTAATAATACTGACCTAACTGAAGCCCGAGAGATCAACTTTGAATACCTTAAACATGTTGTTTTAAAATTCATGTCCTGTCGAGAATCTGAG
Seq A exon
GCTTTTCATCTCATAAAAGCAGTGTCAGTGCTGCTGAATTTCTCACAAGAAGAGGAGAATATGCTCAAAGAGACTCTGGAATATAAG
Seq C2 exon
ATGTCTTGGTTTGGATCCAAACCAGCTCCCAAGGGCAGCATCCGGCCATCTATCTCCAACCCTCGGATACCATGGTCCTAGACCCACCCAAGGATAGAGCTACGTGGGCTGACACTCTTCCTATGAAAAGAATACTGACACAGCAGACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014493_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.421 A=0.000 C2=0.154
Domain overlap (PFAM):
C1:
PF0146515=GRIP=PU(46.7=36.8)
A:
PF0146515=GRIP=PD(48.9=75.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAAGACAGGCCCTGAGAT
R:
CTTGGGAGCTGGTTTGGATCC
Band lengths:
169-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]