DreEX6051159 @ danRer10
Exon Skipping
Gene
ENSDARG00000008979 | golga1
Description
golgin A1 [Source:ZFIN;Acc:ZDB-GENE-040426-1237]
Coordinates
chr8:41460289-41467044:-
Coord C1 exon
chr8:41466784-41467044
Coord A exon
chr8:41463753-41463839
Coord C2 exon
chr8:41460289-41461681
Length
87 bp
Sequences
Splice sites
3' ss Seq
CTTTCTGCTTCTCTCTTCAGGCT
3' ss Score
12.14
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
AAGCTGAAACCAGATCCTGACTCTGAGATGAAGGAAAGACTTCAGGATGGGAGACAGGAGAGATCTGCAGAAAAGACCGTCTTGGAGACACCGATGCCCACCGCAGCTCCAAGCCCAGCTCCAGGACTCAATCAAACCCCAGGCCCAATTACCCCCAACACCACCGTCACCAACAGTTCAGACATCACAGACACCAGAGAAATCAACTTCGAGTACCTCAAACACGTGGTGCTGAAGTTCATGTCATCCAGAGAGGCAGAG
Seq A exon
GCTTTCCAGCTCATCAGAGCCGTTTCTGTGCTCCTGCATTTCTCAAAAGAAGAGGAGGACATGCTCAAACAGACACTGGAGTACAAG
Seq C2 exon
ATGTCGTGGTTTGGTTCCAAGCCCTCACCCAAAGGTATCATACGACCTTCCATCTCAGGAACATCAAGCTGGAGCTGAGAAACCCAAAACGGCACATCTCTGAGACCAGGTGAAAGAGGGAACAGTAAATGATCTCAGTAGAAAAGGGAACAATTGCTGACTCGGCAGTTTCAGTCTCTGCCTCAACAGTTGCTATGTAGCTCACGCCCTTTAAAAGAACGGGACACACAAACAACTCTGCGTTTTTTCGCTAAAATATTGCAGGGACTTGAAAACCAAGGCTTTATGAACATCGTCTTTTTGTGACTTGGGGAGTTTCGTCGTCTAATGAAATGAACTCAAGTTTCATCTGCTTAAAAAAACAAAACAAAAACAAAAAACAATCATCGCTTTTTCCAACATCCTGTATTGACTCGATTATTTTAACTCTGTGAAATCAAGGCTGGGCCAATCATGAAGAGAATGATCCTCCAAAACGTCAGTGAAAATCAGGAATGGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000008979-'27-32,'27-31,28-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.713 A=0.000 C2=0.120
Domain overlap (PFAM):
C1:
PF0146515=GRIP=PU(46.7=24.1)
A:
PF0146515=GRIP=PD(48.9=75.9)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAATCAAACCCCAGGCCCAAT
R:
TGATACCTTTGGGTGAGGGCT
Band lengths:
173-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]