MmuEX0021409 @ mm9
Exon Skipping
Gene
ENSMUSG00000026754 | Golga1
Description
golgi autoantigen, golgin subfamily a, 1 [Source:MGI Symbol;Acc:MGI:1924149]
Coordinates
chr2:38871781-38875173:-
Coord C1 exon
chr2:38875003-38875173
Coord A exon
chr2:38874510-38874596
Coord C2 exon
chr2:38871781-38874009
Length
87 bp
Sequences
Splice sites
3' ss Seq
AAAAGTGGGTTTTGTTTCAGGCT
3' ss Score
5.37
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
AAAATCAGACCTGACAGTGAGCTTTTTGAGGTCCGGGAGAAGACAGGCCCTGAGATACCAAATATGGCCCCTTCTGTCACTAATAATACTGACCTGACTGATGCCCGAGAGATCAACTTTGAATACCTTAAACATGTTGTTTTAAAATTCATGTCCTGTCGAGAATCTGAG
Seq A exon
GCTTTTCATCTCATAAAAGCAGTGTCAGTGCTGCTGAATTTCTCACAAGAAGAGGAGAATATGCTCAAAGAGACTCTGGAATATAAG
Seq C2 exon
ATGTCTTGGTTTGGATCCAAACCAACTCCCAAGGGCAGCATCCGGCCATCTATCTCCAACCCTCGGATACCATGGTCCTAGAGCCATCCAAGGATAGAGCTACATGGGCTGACACTCTTCCTGTGAAAAGAATACTGACACACCAGACTGGGTGGGTTTATACATCGATGTAACTACAGTATTTTGTACAAGTGTCTAGACAGTTTACAAGACTTTAGGCCCACCTCCCTGTAGACTGATAATGAACTTCAAAGGGAGCTAATTCTATCATAATGGTTATTAAATGAGAAGGAATCCTGGGCACTGCCCAGATTTCCACAGTGCTGCTAATATCCCAGCTCTGGCCAGCTGCAACTGAGTCCTCTATCTTTTAACATTAGCACTTAAAGATGACGTGATTGGCATGTCAGGTGAAAATTAATTATGAAGCAGAGGTAACAGGACTGAAGGTGGAGATAGTCCTTTCATAAAAAGCCAACTCAAGGGTGGTCTTTGGAGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026754_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.421 A=0.000 C2=0.231
Domain overlap (PFAM):
C1:
PF0146515=GRIP=PU(46.7=36.8)
A:
PF0146515=GRIP=PD(48.9=75.9)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTGATGCCCGAGAGATCA
R:
CCTTGGATGGCTCTAGGACCA
Band lengths:
170-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: