BtaEX6046133 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015286 | GOLGA1
Description
golgin A1 [Source:HGNC Symbol;Acc:HGNC:4424]
Coordinates
chr11:95869270-95871381:-
Coord C1 exon
chr11:95871211-95871381
Coord A exon
chr11:95870611-95870697
Coord C2 exon
chr11:95869270-95870165
Length
87 bp
Sequences
Splice sites
3' ss Seq
CAAAACTTACTTTGTTTCAGGCT
3' ss Score
6.93
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
AAAATTAGACCTGATAATGAGCTTTTTGAAGTCCGAGAGAAGCCTGGGCCTGAGATGTCAAACTTGGCACCTTCGGTCACAAATAATGCTGACCTGACTGACGCTCGTGAGATCAACTTCGAGTACCTCAAACACGTGGTTTTAAAATTCATGTCCTGTCGCGAATCTGAG
Seq A exon
GCTTTTCATCTTATAAAAGCTGTGTCAGTGTTGCTGAACTTTTCACAAGAGGAGGAGAACATGCTCAAAGAAACCCTGGAGTATAAG
Seq C2 exon
ATGTCGTGGTTTGGGTCCAAGCCAGCTCCCAAGGGCAGCATCCGGCCGTCTATCTCCAACCCTCGGACACCGTGGTCCTAGGTGGCACTACCCAGGGATGGGGGCTCCAAGGGCTGACACTTTTTCTGTGAAAAGAACACTGACACACCACAGTCCTGGTGGGTTTTTAATCACTGTAACTGCAGTATTTTGTACAAGCGTCTGAACATTGTTTACAAGACTTAAGGCCCACTCCTGCAGACTGATACGAATCTCAGGAGGTCGCTGATCCTGACATCCTGGTTTCCGGAGAGCCCTGGCACAACCCACATTGCCACAGTGCTGCTAAAATCCCAGCTCTGGCCAGCACCCACCTGCACCTGAATCTTCTTTCAGTTAGCACTTAAAGCTGAAGCCCTCAGCCTGTGTCAAGAGGGGAGGCAGCCAATCCATCATGTGGTGATGATGCTGGACAGACAGGCCTTCAAAACGGTGCCCAGGAGGGCAGACCCACCTGCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015286-'28-31,'28-30,29-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.439 A=0.000 C2=0.423
Domain overlap (PFAM):
C1:
PF0146515=GRIP=PU(46.7=36.8)
A:
PF0146515=GRIP=PD(48.9=75.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGCACCTTCGGTCACAAAT
R:
GGTGTCCGAGGGTTGGAGATA
Band lengths:
179-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]