GgaEX1026949 @ galGal3
Exon Skipping
Gene
ENSGALG00000001025 | GOLGA1
Description
NA
Coordinates
chr17:10297362-10298939:+
Coord C1 exon
chr17:10297362-10297532
Coord A exon
chr17:10298498-10298584
Coord C2 exon
chr17:10298859-10298939
Length
87 bp
Sequences
Splice sites
3' ss Seq
GACACTGTGGTTTCTTTCAGGCA
3' ss Score
9.15
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
AAAATAAGGCCGGACAGTGAAGTACCTGAACTACGTGAAAAAACAAATTCTGAAGTGCCTAATGCTTCTGTGACTGTCACAAACAACTCGGATTTAAATGACTCAAGGGAGATAAACTTTGAGTACCTTAAACATGTTGTACTAAAATTCATGTCCTGCCGGGAGTCTGAG
Seq A exon
GCATTCCATCTTATTAAGGCTGTTTCTGTGTTACTGAATTTTTCCCAAGAGGAAGAAAATATGCTTAAAGAAACTTTGGAGTACAAG
Seq C2 exon
ATGTCGTGGTTTGGGTCAAAGCCATCTCCCAAAGGCAGTATCCGGCCCTCTATCTCAAGCCCAAGGACACTGTGGTCTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001025-'20-22,'20-21,21-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.509 A=0.000 C2=0.154
Domain overlap (PFAM):
C1:
PF0146515=GRIP=PU(46.7=36.8)
A:
PF0146515=GRIP=PD(48.9=75.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTGTCACAAACAACTCGGA
R:
CACAGTGTCCTTGGGCTTGAG
Band lengths:
175-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]