GgaEX1026949 @ galGal4
Exon Skipping
Gene
ENSGALG00000001025 | GOLGA1
Description
golgin A1 [Source:HGNC Symbol;Acc:HGNC:4424]
Coordinates
chr17:9576369-9577946:+
Coord C1 exon
chr17:9576369-9576539
Coord A exon
chr17:9577505-9577591
Coord C2 exon
chr17:9577866-9577946
Length
87 bp
Sequences
Splice sites
3' ss Seq
GACACTGTGGTTTCTTTCAGGCA
3' ss Score
9.15
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
AAAATAAGGCCGGACAGTGAAGTACCTGAACTACGTGAAAAAACAAATTCTGAAGTGCCTAATGCTTCTGTGACTGTCACAAACAACTCGGATTTAAATGACTCAAGGGAGATAAACTTTGAGTACCTTAAACATGTTGTACTAAAATTCATGTCCTGCCGGGAGTCTGAG
Seq A exon
GCATTCCATCTTATTAAGGCTGTTTCTGTGTTACTGAATTTTTCCCAAGAGGAAGAAAATATGCTTAAAGAAACTTTGGAGTACAAG
Seq C2 exon
ATGTCGTGGTTTGGGTCAAAGCCATCTCCCAAAGGCAGTATCCGGCCCTCTATCTCAAGCCCAAGGACACTGTGGTCTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001025-'32-43,'32-41,34-43
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.460 A=0.000 C2=0.154
Domain overlap (PFAM):
C1:
PF0146515=GRIP=PU(46.7=36.8)
A:
PF0146515=GRIP=PD(48.9=75.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTGTCACAAACAACTCGGA
R:
CACAGTGTCCTTGGGCTTGAG
Band lengths:
175-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]