HsaEX6063012 @ hg19
Exon Skipping
Gene
ENSG00000136935 | GOLGA1
Description
golgin A1 [Source:HGNC Symbol;Acc:4424]
Coordinates
chr9:127640646-127644233:-
Coord C1 exon
chr9:127644063-127644233
Coord A exon
chr9:127643450-127643536
Coord C2 exon
chr9:127640646-127642889
Length
87 bp
Sequences
Splice sites
3' ss Seq
CAAAACTTACTGTGTTTCAGGCT
3' ss Score
6.96
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
AAAATCAGACCCGATAATGAGCTCTTCGAAGTCCGGGAGAAACCTGGACCTGAGATGGCAAACATGGCGCCTTCCGTCACGAATAACACTGACCTGACAGATGCCCGCGAGATCAACTTTGAGTACCTTAAACATGTGGTTTTAAAATTCATGTCTTGTCGCGAATCCGAG
Seq A exon
GCTTTTCATCTTATAAAAGCTGTGTCAGTGTTGCTGAACTTTTCCCAAGAGGAGGAGAACATGCTCAAGGAAACTCTGGAATATAAG
Seq C2 exon
ATGTCATGGTTTGGGTCCAAACCAGCTCCCAAGGGCAGCATCCGGCCGTCTATCTCAAACCCTCGGATACCATGGTCCTAGAGGGGACTACCCAAGGATGGAGCTCCGTGGGTTGACACTTTTTCTGTGAAAAGAACACTGACACACCAGTCTGGGTGGGTTTTTAATCACTGTAACTGCAGTATTTTGTACAAGTGTCTAAACATTGTTTACAAGACTAAGGCCCACTTCCCTGCAGGCTGACCTGAACCTCAGGGGGTAGCTGATCCTGTCATTCTGGTCACCAAACAGGAGGGTCCTGGCACTACCCAGATTTCCACAGTGCTGCTAATATCCCAGCTCCAGCCAGCACCCCATCTGCACCTGAATCCTCTAACTTCACGGTAGCACTTACAGCTGAAGCCATCAGCATCTGGCAGGCACACCTGAGTCACCATGTAGCGCTGCTACTGGAGGTAGAGACGGCCCTTTGAGATGGTGCCCAGCAGGCCAAACCCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136935-'32-31,'32-30,33-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.484 A=0.000 C2=0.192
Domain overlap (PFAM):
C1:
PF0146515=GRIP=PU(46.7=36.8)
A:
PF0146515=GRIP=PD(48.9=75.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCTTCCGTCACGAATAACA
R:
GGACCATGGTATCCGAGGGTT
Band lengths:
182-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)