GgaINT0126285 @ galGal4
Intron Retention
Gene
ENSGALG00000001025 | GOLGA1
Description
golgin A1 [Source:HGNC Symbol;Acc:HGNC:4424]
Coordinates
chr17:9577505-9577946:+
Coord C1 exon
chr17:9577505-9577591
Coord A exon
chr17:9577592-9577865
Coord C2 exon
chr17:9577866-9577946
Length
274 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
ATTGTGCTTTCCTGTCCTAGATG
3' ss Score
9.6
Exon sequences
Seq C1 exon
GCATTCCATCTTATTAAGGCTGTTTCTGTGTTACTGAATTTTTCCCAAGAGGAAGAAAATATGCTTAAAGAAACTTTGGAGTACAAG
Seq A exon
GTAAGGATTCTGTTGTACCTGTACCTATACCTGGACTTGCAGTAAAAGACGTGAATGCTCTTAGGTCCTGGAGATGCTGAAAAGTAGCTGTTCCTTCCAGATTTAATCATGTGGAACCATTTTCACTTTCACAACCGAAGTTTGCAGAGTTCTCTTTTATAAGTTGTTTCCATCACATGATGGGGAGATGCATATATACTGTATTCTTGTTCCAATCTCCAGCTTCTTAAAAGTGTGAACCTAGCATGATATGTATTGTGCTTTCCTGTCCTAG
Seq C2 exon
ATGTCGTGGTTTGGGTCAAAGCCATCTCCCAAAGGCAGTATCCGGCCCTCTATCTCAAGCCCAAGGACACTGTGGTCTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001025:ENSGALT00000001514:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.154
Domain overlap (PFAM):
C1:
PF0146515=GRIP=PD(48.9=75.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTCCATCTTATTAAGGCTGTT
R:
GACCACAGTGTCCTTGGGCTT
Band lengths:
164-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]