DreINT0073763 @ danRer10
Intron Retention
Gene
ENSDARG00000008979 | golga1
Description
golgin A1 [Source:ZFIN;Acc:ZDB-GENE-040426-1237]
Coordinates
chr8:41460289-41463839:-
Coord C1 exon
chr8:41463753-41463839
Coord A exon
chr8:41461682-41463752
Coord C2 exon
chr8:41460289-41461681
Length
2071 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
3' ss Seq
ATGTTTTGTATGCTTTTCAGATG
3' ss Score
9.55
Exon sequences
Seq C1 exon
GCTTTCCAGCTCATCAGAGCCGTTTCTGTGCTCCTGCATTTCTCAAAAGAAGAGGAGGACATGCTCAAACAGACACTGGAGTACAAG
Seq A exon
GTGTGTAACAGAGAGTCTGTAAGTATGATGGAGGATCAACATTTAGAAAGGTGTTCTTCTCTAGCCTCATCTCCTCCGCACCCTAACTAGGCCATACTGCCGAGGCAGAGAACAATGTGGGTCAGGATATGTGGCTCAACGCTCTGAATCAAACCATTAGCACTCAGTGTCATGGTCAGGAAAAGCATCTGCCAGGTATTTATAGATCAGGCCGGCAGCAGTGCTGGAAAGCAAGGAAATCGCTGCACATCACTGTGCTACATTACAACACCGCTCCAGTCCCTGCTGCTATCAGCAGGCTTAAGTGGAAGATTTGTGGTGGAGTTATTATTATGTTATGTTATGTTTTATCTTAAATTTCGATTGGAGATGTACCAAGTGTAATATTATTTTTTAAAAGCACACACACATCATAAATCTGTTTATATAAAATAGCTAAAAAAAAAATAATTAGTTGATTAGATATCAGGTTAAAACAATGAAACCTGTTCAGCAATTCACCACTGGGCTGCAGTCTGAATAAAGCTGCATTTTTCATGTGAATGTTAGAGATTGCTGCCAAATGATTTATATTTTCAAAAGGGTGAAAGAAAAATTTTAAATTACTTAAATTTATAGATTTTTATTTTTGTATAGTAGTGTTTGTTATAAACAATGTATGTGTACTTCGCTACTTTGTAAAAATTTTAAACAAATACCATAACGAAGCAATTTTTCTTCACTACTGGTCACATGGAATGCCTTTAGGGCGGGGCTAAGGGGCTATGCCTTTAGGACTTGTCTCGTTTCTGCTCTCTCTTTCATCTGTTCGTCAATGAAAGATTATTTTGTTAGCAACACCCATCTTCCAATAATCCAATCGGTTCCCGAAGGACAAACTCATGTGCCACCCTACTTTTTTTTCTCATTTCAGGACAGTTTTAAGTTGATTTATGTCATGATAGAGAAAAAAAGGACAATTTTAACTTCTGTTTCATTCATTCATTCATTTTCTTTTTGGCTTAGTCCCTTTATTAATCCGGGGTCGCCACAGCGGAATGAACAGCCAACTTCACACACTCATTTACAATCATACACTACGGACATTTTAACTAATCCCAATTCACCTTTACCGCATGTCTTTGGACTGTGGGGGAAACCAGAGCACCCTGAGGAAACTCACGTGAATGCAGGGAGAACATGCAAACTCCACACAGAAACGGCAACTGACCCAGCCAAGGAGCGAACCAGCGACCTTTTTGCTGAGACGACAGCACTACTTACTGCGCCGCCCACTTCTGTTTCATGACTAGTTTAAATTATTGAGACATTTTAAAAATGTTTTGGCATGAAAAAAAGCCTCGTTTACTGAAATCACATCACCTTGCTAATTTGGTATGAACTCCGAAACCACCCTACTTTTTTCACATTTTAGGACAGTTTCAAGTTGATGTACTCTACATCACGATAGTGTGAAAAAAGGACTATATTAACTTTTCGTTTTATGGCTAGTTTAAATTTGAGATATTTTGCAACTGTTATGTGATTATATAAAGCCTTGTTTACTGAAATCACATTACCTTGCTAATTTGGTATGAACTCTGAAACCGCCCTACTTTTTTCTCATTTTAGGACAGTTGCAAGTTGATTTATGTCATGATAGAGGTTAAAAAAGGACAATCTTAACTTCCTTTTAACAATTAGTTAAAATTTTCGAGACTTTTTATTCACACTCAGAGACGTCACAAAGCACGCCCAGGTACAGACAGCCAGTCTACACACTGGAATCCACACAAGGATCTAATCTGCGTGACGCAGCTTCAAAAAATTTGTTTCAAACCGGAAGAACAAATTTGCTCGAAATAACACAAAAACAACCAATTTTCACTTTTTTTTTTTTGGTGAAATTTATGTCCTAATAGTGTTTTAGCAGTGTGGGACACATTTTAAGACTGTCAACAGTTCAAAATATATGTGTTTTTGTGTTTAGTGACCCTTTAAGTTTTCACTTAAAGGAGAACACACACGGAGAAAATGAGGTGTCTTACGTTTTGAAGCACTGGTCGAGACTGATGTTTTGTATGCTTTTCAG
Seq C2 exon
ATGTCGTGGTTTGGTTCCAAGCCCTCACCCAAAGGTATCATACGACCTTCCATCTCAGGAACATCAAGCTGGAGCTGAGAAACCCAAAACGGCACATCTCTGAGACCAGGTGAAAGAGGGAACAGTAAATGATCTCAGTAGAAAAGGGAACAATTGCTGACTCGGCAGTTTCAGTCTCTGCCTCAACAGTTGCTATGTAGCTCACGCCCTTTAAAAGAACGGGACACACAAACAACTCTGCGTTTTTTCGCTAAAATATTGCAGGGACTTGAAAACCAAGGCTTTATGAACATCGTCTTTTTGTGACTTGGGGAGTTTCGTCGTCTAATGAAATGAACTCAAGTTTCATCTGCTTAAAAAAACAAAACAAAAACAAAAAACAATCATCGCTTTTTCCAACATCCTGTATTGACTCGATTATTTTAACTCTGTGAAATCAAGGCTGGGCCAATCATGAAGAGAATGATCCTCCAAAACGTCAGTGAAAATCAGGAATGGGTGTCATGAAACATTACTTTAAATCTCGTTTTTATGTGTAAATTACAAATCCATACATTCCATACAAGTATTTATATTTGGGAATACTGTATATAAGTGATGATGAGAGGGATTATAAATCGGTGGAGACCTAAAATACGTTTTTGTCATCCTACACAGTCATTACTCTCAAATCTGTGTGTGTATGTGTGTGAGATTCTTCACTGTGGGCTTGAAACTGTAATATAGAGGCATATATGCACAGATTGAGGAAACGAGCATGCATGCCTTATACTGAATGCTTTGATTGTACTTTGGTTTTGAGTGTATACTGAAGCATTTGAGTACACTTGAAGCCTTAAAATACTGTCAGCTGCATTTATTTCTCCGAGAATAAGTCGATAAAATCCTGCGGAAGGGAAAAAGTCAGTGTTTTGCTGTCAGGACTGTGTCATTTTGTGTGTTTTAACACTTCAGCAGCACTAAGGTTTAAACATCGAATGAAAACTTCTGGTGAAAATAGCTGAATTGAGCCTCTACGGGACAAAAACCATGTTTCCTGTTTTTAGAAAAAAAAAGAAACCCAAAGAATTTCTGTTTTATGTATGGACTGATGAAATTCCGAAGCTAACCGTGCTGTAAATGAAGGTTCTCTGGAGTCCTATTGGAGAATGCTGATAAACGCCCTGTGTATGAACATTGTAGGAATAATATTTTTATTTAAACATCCAAAAAATGCACTTTTTTTATTTACAACTGTATTCATATTTCGTTTGTTATGATACTGTAGCCATCATCACAGTATCCCATTGCCTCTGTTTTCAGCAAAATACCACTACAATCCTTACTTTGGTTTCAGTTCATGGTTTGTCAGGAGCATCAAAACTTGATTAAAAAATTAAAATCTTTCTTAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000008979:ENSDART00000098578:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.120
Domain overlap (PFAM):
C1:
PF0146515=GRIP=PD(48.9=75.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]