MmuINT0178187 @ mm9
Intron Retention
Gene
ENSMUSG00000015335 | Zdhhc12
Description
zinc finger, DHHC domain containing 12 [Source:MGI Symbol;Acc:MGI:1913470]
Coordinates
chr2:29946464-29947353:-
Coord C1 exon
chr2:29947187-29947353
Coord A exon
chr2:29947087-29947186
Coord C2 exon
chr2:29946464-29947086
Length
100 bp
Sequences
Splice sites
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
3' ss Seq
CCTAGCTCTCCATCCTCTAGGTC
3' ss Score
9.55
Exon sequences
Seq C1 exon
CAGCCCCTGCGTGCCCGGCACTGTCGTGATTGCCGCCGCTGTGTTCGGCGCTATGATCACCACTGTCCCTGGATGGAGAACTGTGTGGGTGAACGCAACCACCCGCTCTTTGTGGCCTACCTGGCACTGCAGCTGGTAGTTCTGCTGTGGGGCCTGTGCCTGGCATG
Seq A exon
GTAGGTACCTGGGGGAGCACAGACAGCATGCACACAGGTACTCAGGGAACAGGAGTCACTGGGACCCTGCAGTGCCCAGCCCTAGCTCTCCATCCTCTAG
Seq C2 exon
GTCTGGCCTTCAGTTCTTCCAGCCCTGGGGGCTGTGGCTCCGGTCCACTGGGCTCCTGTTCACCACCTTCCTGCTGCTCTCCTTCTTCGCGTTAGTGGTTGCCCTGCTCCTGGCCTCCCACCTCTACCTGGTAGCCAGGAACACGACTACCTGGGAGTTCATATCTTCACACCGAATCGCCTACCTCCGCCAGCGCACCAGCAACCCCTTTGACCGAGGGCCGACTCGAAACCTGGCCCACTTTTTCTGTGGTTGGCCCTCTGGGCCCTGGGAGACTCTCTCGGCTGAGGAAGAGGAAGAAGGCAGCAGCCAGGTTGTCTAGGGTTGCTGGAGAGAAGGCTGCTGTTGTGCCTAAAAGCCAGAGGCTGTGCCAGCTAGGGATCAGCCCACTCAGCCTAAGGCCTTTACGTCTTCCTAGGGCTTCCAGCCCTCAGGAGAGAAGTAGACAGAACCCCCCCTGCCACCCCTAAAGGAAGACATAGAAGAAAAGGAAATAAGTTGGGGGAGGGGTGTTAAAAGAGAACCTAGACACTACACAACCCCTGGCCTGGCTACCTCGAGTGTACAGTTTTATTAATTTAATGCTCTATATAAAGTCAAGTATTAAAAAGAAAAGCCACCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015335-Zdhhc12:NM_025428:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.028
Domain overlap (PFAM):
C1:
PF0152915=zf-DHHC=FE(34.2=100)
A:
NA
C2:
PF0152915=zf-DHHC=PD(35.4=52.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATGGAGAACTGTGTGGGT
R:
CTCCCAGGTAGTCGTGTTCCT
Band lengths:
255-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: