DreINT0177584 @ danRer10
Intron Retention
Gene
ENSDARG00000052787 | zdhhc12b
Description
zinc finger, DHHC-type containing 12b [Source:ZFIN;Acc:ZDB-GENE-070705-356]
Coordinates
chr5:31225298-31226420:+
Coord C1 exon
chr5:31225298-31225464
Coord A exon
chr5:31225465-31225809
Coord C2 exon
chr5:31225810-31226420
Length
345 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
3' ss Seq
GCTTTAAAACTCTGACACAGGTC
3' ss Score
5.2
Exon sequences
Seq C1 exon
CAACCGATGAGATCGAAACACTGCCAGACGTGTCAGCACTGTGTGCGTCGCTATGATCACCACTGCCCCTGGATCGAGAACTGCGTCGGGGAGAGGAACCATCGCTGGTTTGTGCTTTATCTGGCCGTCCAGTTTGTGGTCTTGCTGTGGGGACTGTACATGGCTTG
Seq A exon
GTGAGCAACATTTATATGCAACTTACATTTGATCAAAATTAATATTCAGAAAAGATGCACTCTTTAGAGAGGACGGTTAAAGAGATTGATCAAAAACATGACTCGCTATCAAGTGATTCCAAACCTTTGTAAATTTATTTTCCCCATTGAACACATAAGAAGATACTTTAAAGAATGTTGCAAACTTCTAGCCATTGATTTAAAGAAAAGCCTACCGATTTCAACATTCTTCAAAATATCTTCTTTTGTGTTCAACATCTCAAATAGGTTTGGAACAACTTGAGGTAAGTAAATGAAGACAATTGTAAATTTGGGGTGACCTATCGCTTTAAAACTCTGACACAG
Seq C2 exon
GTCAGGCTTCAGTCACGCCTCCACCTGGCAGCAGTGGTTGAGGACTAACGGTGTTCTCCTGGGAGCAGCAGCAGTGGTTGCCATTTTGGCCCTCACCGTGCTCCTCCTCCTGGGCTCGCACCTCTACCTGGTGTCCTTAAACACCACCACATGGGAGTTCATGTCCCGACACAGAATCTCATACCTCAAGCACTGCGGTGCAGACGAAAACCCTTTTGACAAAGGAATCCTGCGCAATCTCTGGGGCTTCTTCTGCGCTTGGGAACCGGTGGTTTGGGAGCACGTTTACTTCAAGCAGGGCAATGATCCCATTTGATTCCCTGGGTGTCGTGATGTCCCTGACGTATAACCAATAAGACGGAAGTTGATATTTTATTAGCGGGAAACTTCTTTAAACTTTGCAGGACGTCTACTTCGGTTTCCTTGTGAATGATCCATTTGGAAAGTGTTTCTTAAATGCATGAACTTTGTAGTTGCGATGATGTGATGATCAAGTGTTATCAAATGATGAGTGTTTTTATAAAAGGTGTTTTGCGAATTCTTTACCAGTACTTTGACAATTGTGCTGATTTTTGCACATTTTTAAAGCAAACACAGAACAAAAAGCACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052787:ENSDART00000110974:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0152915=zf-DHHC=FE(34.8=100),PF096225=DUF2391=PU(36.8=50.0),PF041238=DUF373=PU(25.0=39.3)
A:
NA
C2:
PF0152915=zf-DHHC=PD(36.1=53.8),PF096225=DUF2391=PD(61.8=44.3),PF041238=DUF373=PD(73.9=61.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTTGTGGTCTTGCTGTGGG
R:
ATGGGATCATTGCCCTGCTTG
Band lengths:
349-694
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]