HsaINT0185124 @ hg19
Intron Retention
Gene
ENSG00000160446 | ZDHHC12
Description
zinc finger, DHHC-type containing 12 [Source:HGNC Symbol;Acc:19159]
Coordinates
chr9:131483149-131484096:-
Coord C1 exon
chr9:131483930-131484096
Coord A exon
chr9:131483782-131483929
Coord C2 exon
chr9:131483149-131483781
Length
148 bp
Sequences
Splice sites
5' ss Seq
ATGGTGGGT
5' ss Score
6.18
3' ss Seq
CCCTGTCCCCTGCACCGCAGGTC
3' ss Score
9.31
Exon sequences
Seq C1 exon
CAGCCCCTGAGGGCTCGGCACTGCCGTGAGTGCCGCCGTTGCGTCCGCCGCTACGACCACCACTGCCCCTGGATGGAGAACTGTGTGGGAGAGCGCAACCACCCACTCTTTGTGGTCTACCTGGCGCTGCAGCTGGTGGTGCTTCTGTGGGGCCTGTACCTGGCATG
Seq A exon
GTGGGTGCTGCTGCCCGGGTGTAGAGGGAGGGTGGGATGAATGCTCCCACAGGGGTGGACAGAGCCAGGACTCCCAGGGACCCGGCATGGGGAGGGAAGGGCTCCCCTGCCCTCCCCCAGCACCAGGCCCCTGTCCCCTGCACCGCAG
Seq C2 exon
GTCAGGCCTCCGGTTCTTCCAGCCCTGGGGTCAGTGGTTGCGGTCCAGCGGGCTCCTGTTCGCCACCTTCCTGCTGCTGTCCCTCTTCTCGTTGGTGGCCAGCCTGCTCCTCGTCTCGCACCTCTACCTGGTGGCCAGCAACACCACCACCTGGGAATTCATCTCCTCACACCGCATCGCCTATCTCCGCCAGCGCCCCAGCAACCCCTTCGACCGAGGCCTGACCCGCAACCTGGCCCACTTCTTCTGTGGATGGCCCTCAGGGTCCTGGGAGACCCTCTGGGCTGAGGAGGAGGAAGAGGGCAGCAGCCCAGCTGTTTAGGGTTGCTGGAGGCCGGGCTACCGTCTTGTGCCTGAAAACCACGGGGCCTGTCCCCAGCTGGGGTGAGCGCTCAGAGGGCCTGGGGCCCTCACTCCTGCCCACGCCTCCCAGACCCCAGAACGGAGCTTCAAGTCAGACAGATCCCTGCCTTGGTGGGCAGTTCTGCCTTCCAAGGAAGAAGGGGAAGAAAAGGACCTGTGGGTGGCTCAGGCCCAAGCAGACCCCGGGCTCCACCCCAGCCCCGCCCAGGCTGCTGCCAGTGCACACTTTTACAAATTTAATATAAAGCAAGTCCAGTCTTAAAAAGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160446-ZDHHC12:NM_032799:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF0152915=zf-DHHC=FE(39.6=100)
A:
NA
C2:
PF0152915=zf-DHHC=PD(35.4=52.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATGGAGAACTGTGTGGGA
R:
AATTCCCAGGTGGTGGTGTTG
Band lengths:
257-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)