GgaINT0125136 @ galGal3
Intron Retention
Gene
ENSGALG00000004664 | ZDHHC12
Description
NA
Coordinates
chr17:5866540-5867721:-
Coord C1 exon
chr17:5867555-5867721
Coord A exon
chr17:5866969-5867554
Coord C2 exon
chr17:5866540-5866968
Length
586 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
3' ss Seq
ACTTTATTTCTCTTTAAAAGGTC
3' ss Score
9.77
Exon sequences
Seq C1 exon
CAACCAATGCGAGCCAAGCACTGCCAGCTGTGCCAGCACTGTGTTCGGCGCTATGACCATCACTGCCCTTGGATTGAGAACTGTGTAGGAGAGAAGAATCACCCCCTCTTCATAGTCTACCTCAGCGTGCAGCTTGTAGTTCTGCTGTGGGGAGGACACATTGCATG
Seq A exon
GTAAGGCCTAGAAGCAGCACTTTGACCACTGAACTTAGGAGTCTTGGTGCTCCTGGAGATCACCTGTAAGGGGTTTGTGCAGAACATAGCACTGACTGGATTGGTTTTGTATCTTCACCCTGATTCACATCCTGAAGATCAGCTTTTCTGAATCTTCTGATCTGCTGAGGAACGACACAACTGATCAGCAGGCTGAGCAGAATCTGCTGCTCATCTTTGTTTAGAGGTTAAATGAATAGAATTAACAGAAGTAGAAGGGCAACTAATTTTGCTTCAGTTATTATAATACAATATTTATGAGATTTTTGGAAACTCCAACAGAGTTTCAGCCATGGACCTGTTCAGGAGAGGAGTCAGCTGAAGATGACTGCATCCTTTCAGCTGGCAGATAAACCAGTGCTCTTTAAACTTCTTATAACCTGAGGCACTGCTGTTGCAATCTCTTAAGAACTCACAATATATAAAATCACCCGCAGTACACGATGATCAGAGTCTCACCAGTTATGAATCAGATGAAGTGTGACACTTGCTTGGTTTGTATAACTAGTTTTCCATGTTTAACCTTGACTTTATTTCTCTTTAAAAG
Seq C2 exon
GTCCGGCCTTTACTTTAAGCAGTCCTGGGAGTGGCTGCGGCACAACATTTTCCTCCTCATATCCTTCCTCCTGATAGTCATATTCACCATTGTTGTCTTGCTACTGCTTATTTCACACCTCTATCTGATCTCATGCAACACCACCACCTGGGAGTTCATGTCATACCACCGCATCTCCTACCTGCGACACTCTGAGCTGGAGAATCCCTTTGACCAAGGAGTAATCCGCAATCTCTGGATGTTCTTCTGTTCATGCCATCTCACTGCATGGGAGAAAATCTATTTTCACAGGAACAATGAACCTGTCTAGTCACAGTGGTACCTCATCAGTAAAATGCCACCAGACATCTGCAGGTTGTTGGATAAAGTTTTGCTCACCTTGCTCAGAACTTTAATACATCGTGGACTATGCAACATGTTCCACAACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004664:ENSGALT00000007431:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0152915=zf-DHHC=FE(33.7=100)
A:
NA
C2:
PF0152915=zf-DHHC=PD(34.4=53.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGAGAAGAATCACCCCCT
R:
CCATGCAGTGAGATGGCATGA
Band lengths:
352-938
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]