BtaINT0164061 @ bosTau6
Intron Retention
Gene
ENSBTAG00000030540 | ZDHHC12
Description
zinc finger, DHHC-type containing 12 [Source:HGNC Symbol;Acc:HGNC:19159]
Coordinates
chr11:99246414-99247045:-
Coord C1 exon
chr11:99246879-99247045
Coord A exon
chr11:99246739-99246878
Coord C2 exon
chr11:99246414-99246738
Length
140 bp
Sequences
Splice sites
5' ss Seq
ATGGTGGGT
5' ss Score
6.18
3' ss Seq
TTGCTCTCCTTCCGTTGCAGGTC
3' ss Score
12.2
Exon sequences
Seq C1 exon
CAACCCCTGCGGGCTCGGCACTGCCGTGAGTGCCGCCGCTGTGTCCGCCGCTATGACCACCACTGCCCCTGGATGGAGAACTGTGTGGGCGAGCGCAACCACCCGCTCTTCGTGGCCTACCTGGCGCTGCAACTGGTGGTGCTTCTGTGGGCCCTGTACCTGGCATG
Seq A exon
GTGGGTTTCCCTGGTGCCCTGGGTGTGGGGGAGGACCAGCACCCCCAGGCTCCCTCTTCAGGGGCCTCGGACCCTCCCCCAAATGGCCATCGCCTCGGGCGACCCAGCTCTGGATCCTTGTTGCTCTCCTTCCGTTGCAG
Seq C2 exon
GTCTGGCCTCCGCTTCTTCCAGCCCTGGGGGCTCTGGCTGCGGTCCAGCGGGCTCCTGTTCGCCACCTTCCTGCTGTTGTCGCTCTTCTCCCTGGTGGCCGGCCTGCTCCTAGCCTCGCACCTCTACCTGGTGGCCAGCAACACCACCACCTGGGAGTTCATCTCCTCCCACCGCATCGCCTACCTCCGCCAGCGCCCTGGCAACCCCTTCGACCGTGGCCTGACCCGCAACCTGGCCCACTTCTTCTGTGGATGGCCCTCGGGGTCCTGGGAGGCCCTCTGGGCCGAGGACGAGGAGGAGGAAGGCAGTAGCCAAGCTGTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030540:ENSBTAT00000043115:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.028
Domain overlap (PFAM):
C1:
PF0152915=zf-DHHC=FE(34.2=100)
A:
NA
C2:
PF0152915=zf-DHHC=PD(35.4=52.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATGACCACCACTGCCCCT
R:
GTAGAGGTGCGAGGCTAGGAG
Band lengths:
244-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development