MmuALTD0013983-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000064289 | Tank
Description
TRAF family member-associated Nf-kappa B activator [Source:MGI Symbol;Acc:MGI:107676]
Coordinates
chr2:61481772-61482479:+
Coord C1 exon
chr2:61481772-61481842
Coord A exon
chr2:61481843-61481875
Coord C2 exon
chr2:61482364-61482479
Length
33 bp
Sequences
Splice sites
5' ss Seq
AATGTATAA
5' ss Score
-3.61
3' ss Seq
AAATATTGATTTGTTTTTAGGGA
3' ss Score
6.6
Exon sequences
Seq C1 exon
GTGAGACGACAAGAAGTTTCTTCTGGAAAAGAATCCGCCAAGGGTCTCAACATCCCTCTGCATCACGAAAG
Seq A exon
GTCGTTCTAGAGCCTTCTTTGCCAACCCAAAAT
Seq C2 exon
GGATAATATAGAGAAGACTTTCTGGGACCTTAAAGAAGAATTTCATAGGATTTGCTTGCTAGCAAAAGCACAGAAAGATCACTTAAGCAAACTTAATATACCAGATATTGCAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064289-13-17,14-17-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.875 A=NA C2=0.025
Domain overlap (PFAM):
C1:
PF128452=TBD=PU(10.9=20.8)
A:
NA
C2:
PF128452=TBD=FE(68.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACATCCCTCTGCATCACGA
R:
TGCTTAAGTGATCTTTCTGTGCT
Band lengths:
113-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: