MmuEX0052344 @ mm9
Exon Skipping
Gene
ENSMUSG00000027022 | Xirp2
Description
xin actin-binding repeat containing 2 [Source:MGI Symbol;Acc:MGI:2685198]
Coordinates
chr2:67314775-67343180:+
Coord C1 exon
chr2:67314775-67314923
Coord A exon
chr2:67320303-67320440
Coord C2 exon
chr2:67343091-67343180
Length
138 bp
Sequences
Splice sites
3' ss Seq
ACCTTCTTAAATCACCATAGGTC
3' ss Score
9.28
5' ss Seq
CAGGTAACG
5' ss Score
10.52
Exon sequences
Seq C1 exon
TGACCTTTAACCTTACTAAGCCCGGAGACGTCAGTACTGCTGGGAGTGAGGACCAGTCGGATCTCCTGGAGGCGCTGTCCCTGAAGGAGAGGATGGCAAGGTACCAGGCAGCTGTTTCACGGGGTGACACCCGCAGCTTCTCGGCTAAT
Seq A exon
GTCATGGAAGAATCAGATGTGTGCACCGTGCCTGGTGGTTTAGCCAAGATGAAAAGACAATTTGAGAAGGATAAAATGACTTCAACCTGCAACGCCTTTTCTGAGTATCAGTACCGACATGAGAGCAGAGCTGAGCAG
Seq C2 exon
GAGGCAATCCACAGCAGTCAAGAAATAATAAGAAGGAATGAACAAGAAGTTTCTAAAGGACATGGAACTGATGTCTTCAAAGCAGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027022_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.636 A=0.587 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTTTAACCTTACTAAGCCCGG
R:
TCTGCTTTGAAGACATCAGTTCCA
Band lengths:
234-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: