HsaEX6016449 @ hg19
Exon Skipping
Gene
ENSG00000163092 | XIRP2
Description
xin actin-binding repeat containing 2 [Source:HGNC Symbol;Acc:14303]
Coordinates
chr2:168067245-168096475:+
Coord C1 exon
chr2:168067245-168067405
Coord A exon
chr2:168074676-168074810
Coord C2 exon
chr2:168096365-168096475
Length
135 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTTAAATCATCCTAGATG
3' ss Score
7.83
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
CGACTGCTGGCCCTAATAAGCCTGAGAGTGGATTTGCAGAAGACAGTGCTGCTCGGGGCGAGGGTGTGTCAGACCTCCACGAAGTGGTCTCCCTGAAGGAGCGGATGGCGAGGTACCAGGCAGCTGTTTCCAGGGGTGACTGCCGCAGCTTCTCTGCTAAT
Seq A exon
ATGATGGAAGAATCAGAAATGTGCGCAGTGCCTGGTGGTTTGGCCAAGGTGAAGAAACAATTTGAGGACGAAATTACTTCTTCCCGTAATACCTTTGCTCAATACCAATATCAACATCAGAACAGATCTGAGCAG
Seq C2 exon
GAGGCAATTCATAGCAGCCAGGTTGGCACTTCAAGAAGCAGCCAGGAAATGGCAAGAAATGAACAAGAAGGGTCCAAAGTACAGAAAATTGATGTTCATGGAACAGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163092-'7-10,'7-9,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.643 A=0.689 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACTGCTGGCCCTAATAAGC
R:
TCTGTACTTTGGACCCTTCTTGT
Band lengths:
246-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)