DreEX6020608 @ danRer10
Exon Skipping
Gene
ENSDARG00000071113 | xirp2a
Description
xin actin-binding repeat containing 2a [Source:ZFIN;Acc:ZDB-GENE-040108-7]
Coordinates
chr6:9950868-9954708:-
Coord C1 exon
chr6:9954599-9954708
Coord A exon
chr6:9953376-9953510
Coord C2 exon
chr6:9950868-9950936
Length
135 bp
Sequences
Splice sites
3' ss Seq
TTTTTAATGTGTGTTCTAAGGTC
3' ss Score
9.68
5' ss Seq
CAGGTACAA
5' ss Score
7.09
Exon sequences
Seq C1 exon
CTGCGGGCGGCGCAGGAGAAACACACGCTGACGGAGAGACTGTTCCTCTCAAACAGAGACTGGCCTTATACCAAGCTGCCACTACCAAAGAGGAGAGAAGCCCATCTGTG
Seq A exon
GTCATGGACAGCTCTGAGCCGTGCTCTCTGCCAGGTGGACTGGCCAGCGTGAAGAAACAATTTGAAAGCCAAGAGTTAAGCTCCTCTTCTGCATCCCAAAGCACTGTTGCACAGTACCACTACCAGCAGAGACAG
Seq C2 exon
CAGGTGGTGAGCTCATCAGAGGTGACAGTACGAAGCAGTGTTAAAGAAAGCAGTACCTCAAATGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071113-'7-9,'7-6,8-9=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.878 C2=0.870
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGCAGGAGAAACACACG
R:
CTGAGCATTTGAGGTACTGCT
Band lengths:
171-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]