RnoEX0099948 @ rn6
Exon Skipping
Gene
ENSRNOG00000034258 | Xirp2
Description
xin actin-binding repeat containing 2 [Source:RGD Symbol;Acc:1302980]
Coordinates
chr3:53592514-53630565:+
Coord C1 exon
chr3:53592514-53592662
Coord A exon
chr3:53599210-53599347
Coord C2 exon
chr3:53630479-53630565
Length
138 bp
Sequences
Splice sites
3' ss Seq
ACCTTCTTAACTCACCGTAGGTC
3' ss Score
9.25
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
AGACCTTCAACCTTACTAAGCCGGGAGACGTGAGTACTGCTGGGACTGAGGACCAGTCGGATCTCCTAGAGGCGCTGTCCCTGAAGGAGAGGATGGCTAGGTACCAGGCAGCTGTTTCACGGGGCGACACCCGCAGCTTCTCGGCTAAT
Seq A exon
GTCGTGGAAGAATCAGACTTGTGCACCGTGCCTGGTGGTTTAGCCAAGATGAAGAGACAATTTGAAAAGGATGAAATGACTTCAACCTGCAATGCCTTCTCTGAGTATCAATACCAACATGAGAGCAGATCTGAGCAG
Seq C2 exon
GAGGCAATCCACAACAGGCAAGAAATAAGAAGGAATGAAGAAGAAGTTTCTAAAGGACACAGAACTGATGTCTTCAAAGCTGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034258_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.526 A=0.609 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTCAACCTTACTAAGCCGG
R:
CATTTCAGCTTTGAAGACATCAGT
Band lengths:
234-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]