MmuEX0038278 @ mm9
Exon Skipping
Gene
ENSMUSG00000026878 | Rab14
Description
RAB14, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1915615]
Coordinates
chr2:35048141-35056640:-
Coord C1 exon
chr2:35056280-35056640
Coord A exon
chr2:35055341-35055426
Coord C2 exon
chr2:35048141-35048199
Length
86 bp
Sequences
Splice sites
3' ss Seq
TGGTATGTTTTGTACTACAGTAC
3' ss Score
5.54
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
Exon sequences
Seq C1 exon
GACGAAGGGGCGTGGCCGTCAGGTTAGTCTCCACCACCCTCTTCCGGGCTCCGCTGGCTGCGCGCGCATCCTCCCCCCTTCTTTTGTGGTCCGGCCCATTGCGAGGGTGACAGGAAACCCTGTGCAGGGAGCGCCGCCATCTTGGGCCAGCCCGAGGAAGATCCTGAGGGAGCCGCAGGAGCAGCCGCCGCCGCCACCGCGACTGCCACCCGAGTGTCTGCAACCTCCGGCCAGCCCGCCTACCTGCCAGGGCCTCGGCTGACGGATTCCGGCCTCCCTCCCGCCGCGTCCGCCCTCCGCTTCCTCGTCCTGACGTCCCCCTCCCGTCCGGAAAGCTGCCCAGCCACCAGCAACCCCCCAG
Seq A exon
TACATTCCACGAGGGCTGAGATACACAATACTGGATCGGTTCAGAGAGGAGACAACTGAATTCCATTTTCTCTCCATTCACACTGG
Seq C2 exon
TGCCACCATGGCAACTGCACCGTACAACTACTCTTACATCTTTAAGTATATTATTATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026878-'0-3,'0-1,4-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0007117=Ras=PU(3.1=27.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGTGTCTGCAACCTCCG
R:
TAGTTGTACGGTGCAGTTGCC
Band lengths:
181-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: