MmuEX0038278 @ mm10
Exon Skipping
Gene
ENSMUSG00000026878 | Rab14
Description
RAB14, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1915615]
Coordinates
chr2:35192621-35201120:-
Coord C1 exon
chr2:35200760-35201120
Coord A exon
chr2:35199821-35200009
Coord C2 exon
chr2:35192621-35192679
Length
189 bp
Sequences
Splice sites
3' ss Seq
TTCCGCATTTTTTTAATAAGGGG
3' ss Score
4.91
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
Exon sequences
Seq C1 exon
GACGAAGGGGCGTGGCCGTCAGGTTAGTCTCCACCACCCTCTTCCGGGCTCCGCTGGCTGCGCGCGCATCCTCCCCCCTTCTTTTGTGGTCCGGCCCATTGCGAGGGTGACAGGAAACCCTGTGCAGGGAGCGCCGCCATCTTGGGCCAGCCCGAGGAAGATCCTGAGGGAGCCGCAGGAGCAGCCGCCGCCGCCACCGCGACTGCCACCCGAGTGTCTGCAACCTCCGGCCAGCCCGCCTACCTGCCAGGGCCTCGGCTGACGGATTCCGGCCTCCCTCCCGCCGCGTCCGCCCTCCGCTTCCTCGTCCTGACGTCCCCCTCCCGTCCGGAAAGCTGCCCAGCCACCAGCAACCCCCCAG
Seq A exon
GGGCGAGGGACGGACCGAAGCCAGAAGTTGTCCTGTAGCTGAGTAATGATGGAACACAAATGATGGCTTCTCCCTATCCTGGCTGGTATGTTTTGTACTACAGTACATTCCACGAGGGCTGAGATACACAATACTGGATCGGTTCAGAGAGGAGACAACTGAATTCCATTTTCTCTCCATTCACACTGG
Seq C2 exon
TGCCACCATGGCAACTGCACCGTACAACTACTCTTACATCTTTAAGTATATTATTATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026878_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0007117=Ras=PU(3.1=27.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGCCCGAGGAAGATCC
R:
TAGTTGTACGGTGCAGTTGCC
Band lengths:
246-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types