MmuEX0028081 @ mm9
Exon Skipping
Gene
ENSMUSG00000036792 | Mbd5
Description
methyl-CpG binding domain protein 5 [Source:MGI Symbol;Acc:MGI:2138934]
Coordinates
chr2:48881520-48942172:+
Coord C1 exon
chr2:48881520-48881620
Coord A exon
chr2:48920225-48920277
Coord C2 exon
chr2:48942110-48942172
Length
53 bp
Sequences
Splice sites
3' ss Seq
TTTGAAATTATGTCTTTTAGAAC
3' ss Score
6.3
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
ATCCGTATGTAAGCTCTCAGCTACTGCTCCAGTGCTATACCTGCCTGCCTGCTACCATGCTCCCTTATCATGGTGGTCATGGACGATAACTTGCTGAAACT
Seq A exon
AACAACACTTTGAGCTGTTAGCTGTTACTACTGTGTAGTTACTTTCATTACAG
Seq C2 exon
GTGCTTTTGAATGTGTGTAGTTTTCAGAGGAATTAAAAACAGAAGAGAAAAGGACAACTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036792-'6-15,'6-11,7-15
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTCCAGTGCTATACCTGC
R:
CCAAAGTTGTCCTTTTCTCTTCTGT
Band lengths:
141-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: