MmuEX0028081 @ mm10
Exon Skipping
Gene
ENSMUSG00000036792 | Mbd5
Description
methyl-CpG binding domain protein 5 [Source:MGI Symbol;Acc:MGI:2138934]
Coordinates
chr2:49018254-49086652:+
Coord C1 exon
chr2:49018254-49018325
Coord A exon
chr2:49064705-49064757
Coord C2 exon
chr2:49086590-49086652
Length
53 bp
Sequences
Splice sites
3' ss Seq
TTTGAAATTATGTCTTTTAGAAC
3' ss Score
6.3
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
ATAACTTCTACAAGAACCTGTGTATCGGATCCTAACTAAATCAAAATGTTTGAAATCAGAAGATCATGATCG
Seq A exon
AACAACACTTTGAGCTGTTAGCTGTTACTACTGTGTAGTTACTTTCATTACAG
Seq C2 exon
GTGCTTTTGAATGTGTGTAGTTTTCAGAGGAATTAAAAACAGAAGAGAAAAGGACAACTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036792_MULTIEX1-6/14=4-9
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCTACAAGAACCTGTGTATCGG
R:
CCAAAGTTGTCCTTTTCTCTTCTGT
Band lengths:
132-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types