MmuEX0028082 @ mm10
Exon Skipping
Gene
ENSMUSG00000036792 | Mbd5
Description
methyl-CpG binding domain protein 5 [Source:MGI Symbol;Acc:MGI:2138934]
Coordinates
chr2:49018254-49099809:+
Coord C1 exon
chr2:49018254-49018325
Coord A exon
chr2:49086590-49086652
Coord C2 exon
chr2:49099717-49099809
Length
63 bp
Sequences
Splice sites
3' ss Seq
AACCTAATTTTATCCCACAGGTG
3' ss Score
10.78
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
ATAACTTCTACAAGAACCTGTGTATCGGATCCTAACTAAATCAAAATGTTTGAAATCAGAAGATCATGATCG
Seq A exon
GTGCTTTTGAATGTGTGTAGTTTTCAGAGGAATTAAAAACAGAAGAGAAAAGGACAACTTTGG
Seq C2 exon
GAGAGCATCAAAGATGTCCACTTCTGCCTCCGTAAGATAGCTATTGCAGGCTGTGTGGTGGAGAAAATACCTATAGAAATTAAGACACTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036792_MULTIEX1-9/14=4-10
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACAAGAACCTGTGTATCGGATCC
R:
TTTTCTCCACCACACAGCCTG
Band lengths:
132-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types