MmuINT0149708 @ mm9
Intron Retention
Gene
NA
Description
NA
Coordinates
chr2:26492696-26493615:-
Coord C1 exon
chr2:26493561-26493615
Coord A exon
chr2:26493154-26493560
Coord C2 exon
chr2:26492696-26493153
Length
407 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
CCATTCCTTTCATCTTCCAGATC
3' ss Score
11.44
Exon sequences
Seq C1 exon
GAAAGTTGGTGACTAAAGTCTGCTTATGCCAAATGCCCAGCAATGTCCAGTTGAG
Seq A exon
GTAAGAGGTAGGCTGGAGCATGCTCAGATGGGATGTGAGTGGCTGCCCTAAAGATGCTGTCCTAGATCAGCACCACAGGCATGGCACAGCTGCTCAGCTGAGCCTGTGACATTGGGGCAAAGAGCAAGTGGCTGTTTCTACGCTCAGTGCTCAGAAGCCCGTGAGCACTAAGAATGGTTTGTAGCCTGACATTTTGCAGAGCCGTGGTGGGAAGGCACTGGGTTTTGCTTTGATGCTGTTGGCCAGACCCCAGTGTCAAACCTCTAGGGCTCACCAAAGGGTTGCATGGTCAGCATTTTAGGGAGATAGAACTTTGGAAGTGGAGGGAGATAGAAATTAAGTTTTCTAGGAGACATCCTGAGGGACTGGAAAAATACAAGAAACTCTCCATTCCTTTCATCTTCCAG
Seq C2 exon
ATCCAGGAGCCAGGAAGAAGGGGGGCTACTTGGCCAACATGGCTGATCACGTGCCTGAGGTATGCCCTCTGACCTCACCAGGGTAACACAGAACCATCCATACAGGCCTTGGGCAGCTGGAAATTTACACTGGTAGCTCTCCCATGTCCTAAGTTAGGAACTGGATTTGGATTGGCTTGGGTTTGACTCTTATTTCCAAGACTGGTGAGGTAAACACTGGATGGAGGACCCTCTAAGGCTCAACCTCTCTATCTAATTGTATATGGCCTTAAGAGAGATAATTGAGTTGGGTGGTGATAACTGGTCACTTGAGTTCAAGGCCAGCCTGGTCTACAAAGCAAGTTCCAGGACAGCCAGGACTGGTACACAAAGAAACCCTGTCTTGAAAAACTAAAAAAAAAAAGGAGAGGGGAAAAAAGGCTGGATGCTGTGACACAAATAAACTTGTCAGTTCTTGA
VastDB Features
Vast-tools module Information
Secondary ID
-Snhg7:NR_024068:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGCCCAGCAATGTCCAGTT
R:
TAGACCAGGCTGGCCTTGAAC
Band lengths:
357-764
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: