MmuEX0045617 @ mm9
Exon Skipping
Gene
ENSMUSG00000026797 | Stxbp1
Description
syntaxin binding protein 1 [Source:MGI Symbol;Acc:MGI:107363]
Coordinates
chr2:32643482-32651690:-
Coord C1 exon
chr2:32651536-32651690
Coord A exon
chr2:32650108-32650233
Coord C2 exon
chr2:32643482-32645157
Length
126 bp
Sequences
Splice sites
3' ss Seq
CGGCCTCTATTCTCCCACAGGTT
3' ss Score
11.61
5' ss Seq
AAAGTAAAA
5' ss Score
1.18
Exon sequences
Seq C1 exon
TGCCCGCTATGGACATTGGCACAAGAATAAGGCCCCCGGGGAGTACCGCAGCGGTCCCCGCCTCATTATTTTCATCCTTGGGGGTGTGAGCCTGAATGAGATGCGCTGTGCTTACGAAGTGACCCAGGCCAACGGCAAGTGGGAAGTGCTGATAG
Seq A exon
GTTCTACTCACATTCTCACTCCCACCAAATTCCTCATGGACCTGAGACACCCCGACTTCAGGGAGTCCTCTAGGGTATCTTTTGAGGATCAGGCTCCAACAATGGAGTGAGAGCCAAAGAGACAAA
Seq C2 exon
GATCCACGCACATTCTCACCCCACAGAAACTGCTGGACACGCTGAAGAAGCTGAATAAAACAGATGAAGAAATAAGCAGTTAAAAAATAAGCTGCCCCCCAAAACCCCGGCTCCCTTCCCAAAATGCTCTGCAGCTCCCCCGTGCGCCACCTCGGTTACTCTGCTGCCTCCCCAGCCCTGCACGCCCTGGCCACCCCGTTGCCGTGCTGAGTTCTTCTCCTGTGCGATGACACCCCATCTTGTCCTCTGAAAAGCAAGAGAGTAATGTGTTGTTTTTTAAAAATGAGCATCTTCTGTATGTATCCCACAGTAAGTTCACATGCAAGCTCCACACTGCAGAAGCGTCAGAACTCCGGACCGAGTGAATTCTCCCTTATTTATGACCCCGTGACCTGTATATAGCCCTGTCCCGCGTGTGCACATTGCTTGAATATGGAAAGGTAGATGTGTGGGTGTCTCTCCAAGCTTGGTTGGATTCATTTCTGTCCTTGTTGGTGTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026797_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.250 C2=0.074
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(12.4=100)
A:
PF0099518=Sec1=PD(2.5=37.8)
C2:
PF0099518=Sec1=PD(2.5=50.0)
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAAGTGGGAAGTGCTGATA
R:
GGTGTCATCGCACAGGAGAAG
Band lengths:
256-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: