BtaEX0035090 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003525 | STXBP1
Description
Bos taurus syntaxin binding protein 1 (STXBP1), mRNA. [Source:RefSeq mRNA;Acc:NM_174619]
Coordinates
chr11:98385181-98395251:+
Coord C1 exon
chr11:98385181-98385335
Coord A exon
chr11:98386832-98386957
Coord C2 exon
chr11:98393290-98395251
Length
126 bp
Sequences
Splice sites
3' ss Seq
CGGCCTCTGTTCTCCCGCAGGTT
3' ss Score
12.68
5' ss Seq
AAAGTAAAA
5' ss Score
1.18
Exon sequences
Seq C1 exon
CGCCCGCTATGGGCACTGGCATAAGAACAAGGCCCCCGGGGAGTACCGCAGTGGTCCACGCCTTATTATCTTCATTCTGGGGGGCGTGAGCCTGAACGAGATGCGCTGTGCTTACGAGGTGACCCAAGCCAACGGCAAGTGGGAAGTGCTCATAG
Seq A exon
GTTCTACTCATATTCTCACTCCCACCAAATTTCTCATGGACCTGAGACACCCCGACTTCCGGGAGTCCTCTAGGGTATCTTTTGAGGATCAGGCTCCAACAATGGAGTGAGAGCCAAAGAAACAAA
Seq C2 exon
GATCCACGCACATTCTCACCCCACAGAAACTGCTGGACACGCTGAAGAAACTGAATAAAACAGATGAAGAAATAAGCAGTTAAAAAATAAGCCGCCCCTCCAAACAAAACCGAACCCTCTCCCCGAAGTGCTCGCAGCCCCGACCGCCTTGGTCCCTTTGCTGACCCCTCCTCCCTCTACCGCCTCCCCCAGCTCTGCACGCCCGGCCGGCACTGTCGCCGCTGCGTTCTCGTGTTTGGTGATGCCCTCTTCTTCTTGTTTGAAACAAAAGAATGCATTGTTTTTTGATTTTTTTTTCTTTAAGAGTCCCTTCTATGTGTATCCTGGAGGAGACGTTTGGGACGAGGGCCATGCTGCCATCAGGTTCCTGGAACCGTTTAGGGTGAATGGACACCTCCTCCCCATTAGTCAGGATTTTATGACCTTGTACATAGCCCAGCGTGACGTGTGCACATTTGCTTGCATATGGGAAGGTAGACGTTTGGGTGTTTTTAAGAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003525_MULTIEX2-3/4=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.250 C2=0.074
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(9.4=100)
A:
PF0099518=Sec1=PD(2.5=37.8)
C2:
PF0099518=Sec1=PD(2.5=50.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCATAAGAACAAGGCCCC
R:
GTTTGGAGGGGCGGCTTATTT
Band lengths:
245-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development