RnoEX0087363 @ rn6
Exon Skipping
Gene
ENSRNOG00000015420 | Stxbp1
Description
syntaxin binding protein 1 [Source:RGD Symbol;Acc:3785]
Coordinates
chr3:11823785-11831697:-
Coord C1 exon
chr3:11831543-11831697
Coord A exon
chr3:11830030-11830155
Coord C2 exon
chr3:11823785-11825475
Length
126 bp
Sequences
Splice sites
3' ss Seq
CGGCCTCTATTCTCCCACAGGTT
3' ss Score
11.61
5' ss Seq
AAAGTAAAA
5' ss Score
1.18
Exon sequences
Seq C1 exon
TGCCCGCTATGGACATTGGCACAAGAATAAGGCCCCCGGGGAGTACCGCAGCGGCCCCCGCCTCATTATTTTCATCCTTGGGGGCGTGAGCCTGAATGAGATGCGCTGTGCCTACGAAGTGACGCAGGCCAACGGCAAGTGGGAAGTGCTCATAG
Seq A exon
GTTCTACTCACATTCTCACTCCCACCAAATTCCTCATGGACCTGAGACACCCCGACTTCAGGGAGTCCTCTAGGGTATCTTTTGAGGATCAGGCTCCAACAATGGAGTGAGAGCCAAAGAGACAAA
Seq C2 exon
GATCCACGCACATTCTCACCCCACAGAAACTGCTGGACACGCTGAAGAAGCTGAATAAAACAGACGAAGAAATAAGCAGTTAAAATCAGCTGCCCTCCAAAACCCTGGCTCCCTTCCCACAATGCTCTGCAGCTCCCCAGTGCGACACCTCGGTTACTCTGCTGCCTCCCCAGCCCTGCACGCCCTGGCCACCCTGTTGCCGCGCTGAGTTCTTCTCCTGTGCGATGACACCCCATCTTGTCCTCTGAAAAGCAAGAGAGTAATGTGTTGTTTTTTAAAAATGAGTATCTTCTGTATGTATCCCACAGTAAGTTCACATGCAAGCTCCACACTGCAGAAGCATCAGAACTCTGGACCGAGTGGACTCTCCCTTATTTATGACCCCGTGACCTGTATATAGCCCTGTACCACGCGTGCACATTGCTTGGATATGGAAAGGTAGATGTGTGAGTGTTTCTCAGAGCTTGTTTGGGCTCATTTCTGTTCTTGTTGGAATCATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015420_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.250 C2=0.074
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(9.4=100)
A:
PF0099518=Sec1=PD(2.5=37.8)
C2:
PF0099518=Sec1=PD(2.5=50.0)
Main Inclusion Isoform:
ENSRNOT00000021178fB14550
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAAGTGGGAAGTGCTCATA
R:
GGTGTCATCGCACAGGAGAAG
Band lengths:
254-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]