DreEX0076282 @ danRer10
Exon Skipping
Gene
ENSDARG00000001994 | stxbp1a
Description
syntaxin binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-050626-106]
Coordinates
chr21:13816486-13824293:+
Coord C1 exon
chr21:13816486-13816640
Coord A exon
chr21:13817468-13817623
Coord C2 exon
chr21:13822611-13824293
Length
156 bp
Sequences
Splice sites
3' ss Seq
CCACCTTTGTTCCTCCGCAGGTT
3' ss Score
12.34
5' ss Seq
AAAGTAAAG
5' ss Score
1.6
Exon sequences
Seq C1 exon
TGCCCGATATGGCCACTGGCACAAGAATAAAACCCCTGGAGAGTACCGCACAGGCCCTCGCATCATGGTCTTCATCATCGGTGGAGCATCCTTTAGCGAGATGCGTTGTGCCTATGAGGTCACACAGGCCAATGGCAAATGGGAGGCCATCGTTG
Seq A exon
GTTCTACTCACTCGCTCACTCCAACCAAATTTCTAATGGACCTGCGGCACCCCGACTTCCGAGAATCTACTAGGGTGTCCTTTGAGGACCCTGACCCCTCAGACGAGTGAGAGAGAGAAAGAGGGAAGGGTGGGAGAGAGAAATCACACTGACAAA
Seq C2 exon
GTTCGACCCATGTCGGCGGTCCCACCCAGCTTCTGGACGCTCTTAAGGCCATGAACAAACCCGACGAGGAATAAACAAGCTAAAAAAAATAAAAATAAATCACAACTTCCTCCCCAAAAACCCCCCATCGCCCAGTAACCCTCTCCCCCTCCCTCCATCCGTCACCCTGTAAATCTCCCCCGCTCCTATATAAATAGTGTATGCATCTTGCTTGAGAGAAAAAAAATTAAATAAAAAACAGATGATTGGTGACAATTAAAAAGAATATTCTATAAATTTATATATATTTAAATATATATATATAATGTTGAGATAAAATAACTGTTGCAAGTATTCTTCTGTTTTACAATGGATGCAAAACCATTAGACCGAGTTTTCATTATTTCAATTGCCATTTAAAAACCTTGAAAGTACCAAATGTTATATGTTACGGAACCTGCTAGAATGTGTAAATGGTAGAATTTTTGCATTCGTTCCTTATTTAACTCGGTGTGTTTTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001994_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.076 A=0.396 C2=0.458
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(48.6=100),PF084476=PAS_3=PU(23.4=21.2)
A:
PF0099518=Sec1=PD(14.3=39.5),PF084476=PAS_3=PD(74.5=92.1)
C2:
PF0099518=Sec1=PD(2.5=56.0)
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCATCGGTGGAGCATCCT
R:
TTACAGGGTGACGGATGGAGG
Band lengths:
256-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]