HsaEX0013072 @ hg19
Exon Skipping
Gene
ENSG00000153237 | CCDC148
Description
coiled-coil domain containing 148 [Source:HGNC Symbol;Acc:25191]
Coordinates
chr2:159195502-159197192:-
Coord C1 exon
chr2:159197110-159197192
Coord A exon
chr2:159196754-159196905
Coord C2 exon
chr2:159195502-159195597
Length
152 bp
Sequences
Splice sites
3' ss Seq
TCAATTTTGTTTCACCATAGAGC
3' ss Score
8.3
5' ss Seq
GAGGTTAGT
5' ss Score
7.15
Exon sequences
Seq C1 exon
ATGTAAAATGGAATCTGAAATAAAATCCCTTCTCAATGAAGAGAACATTGGAAATGAATGTCTTTGTGACCTTACAAATTTTG
Seq A exon
AGCAAGAGCTATCAGAACAACAGTGCACATATCTTAAAAATGTAATAAATCCTATTCAGCAGCTGAGAGCAGATCTAAAATACAGACAGCATCACACTTTGCAGCATTCACACCCACATATTGAGTTTAACTCCATGAAAGTATTGGAAGAG
Seq C2 exon
GTTGACTTTGTGAAGAAACAATTGAAAACTGTCTTTGAAAGACTTAGGCTGGAGCAACAGAGAATAGAAAATGATCTTTCAGACTGGAGTATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000153237_MULTIEX1-6/8=5-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF074186=PCEMA1=FE(14.3=100)
A:
PF074186=PCEMA1=FE(25.5=100)
C2:
PF074186=PCEMA1=FE(15.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAATCTGAAATAAAATCCCTTCTCA
R:
ACTCCAGTCTGAAAGATCATTTTCT
Band lengths:
164-316
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)