MmuEX0009601 @ mm10
Exon Skipping
Gene
ENSMUSG00000036641 | Ccdc148
Description
coiled-coil domain containing 148 [Source:MGI Symbol;Acc:MGI:3039583]
Coordinates
chr2:58982869-59017637:-
Coord C1 exon
chr2:59017516-59017637
Coord A exon
chr2:59003323-59003471
Coord C2 exon
chr2:58982869-58983007
Length
149 bp
Sequences
Splice sites
3' ss Seq
CTCGATTTCACTTCACACAGAGA
3' ss Score
3.79
5' ss Seq
GAGGTTAGC
5' ss Score
3.77
Exon sequences
Seq C1 exon
ATATCCTGGCAGTCCATATGAAAGATGGAACTAGGAGCTCCCGGTATAAGCCGGTGGACTACCAGCAGTTACGGGCCCTAACCGAAGCCACAAGGTCTGCGTCTGCTTCCACAGAGCAGAAG
Seq A exon
AGAAAGAGCTGTCAGAAGAGTGGTGTGCGTACCTTACAGCTGTCATTGATCCTATTCAGCAGCTGAGAACGGGCCTGAAGAGATGGTACCCCACTTCTCAGAGTGCACCCTGCCATGAGGGCTCAGACGCAACTGAGGTTCTGGAAGAG
Seq C2 exon
TAACTTCCAACTAAGTGCAGAAGAGCACTGGACTTACCAGGCTGTCTTAGACCAGTATCCCGGAAATCTCCTTGGCAGAAGAGCTCTGTACTTGGACATGTTGCAAAGATATTTCCCTCACAAGTCCAGGCATCATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036641_MULTIEX1-3/5=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.060 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGGCAGTCCATATGAAAGA
R:
ATGCCTGGACTTGTGAGGGAA
Band lengths:
252-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types