MmuEX0009599 @ mm10
Exon Skipping
Gene
ENSMUSG00000036641 | Ccdc148
Description
coiled-coil domain containing 148 [Source:MGI Symbol;Acc:MGI:3039583]
Coordinates
chr2:59003982-59017637:-
Coord C1 exon
chr2:59017516-59017637
Coord A exon
chr2:59009082-59009185
Coord C2 exon
chr2:59003982-59004064
Length
104 bp
Sequences
Splice sites
3' ss Seq
TGGTTCTCCTCTAAATGTAGCTC
3' ss Score
5.64
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
ATATCCTGGCAGTCCATATGAAAGATGGAACTAGGAGCTCCCGGTATAAGCCGGTGGACTACCAGCAGTTACGGGCCCTAACCGAAGCCACAAGGTCTGCGTCTGCTTCCACAGAGCAGAAG
Seq A exon
CTCCAAAAAGCCATAGAGACGTCAAGGGCTGCGAAAGAGCAGATGCTGATCAAGCAACACAAGCAGGTGTGGTGGCAGGAACAGGAGAGGCTGAAGGGGATCAG
Seq C2 exon
ATGTAAATTGGAGTCTGAAATAAGATCTTGTCTCAATGAGGAGAGCATTGGGAGTGAATGTTTTTGTGAGCTTATGAATTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036641_MULTIEX1-1/5=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCCTGGCAGTCCATATGAAAGA
R:
AAGCTCACAAAAACATTCACTCCC
Band lengths:
194-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types