GgaEX0018967 @ galGal3
Exon Skipping
Gene
ENSGALG00000012555 | CCDC148
Description
NA
Coordinates
chr7:37979191-37983940:-
Coord C1 exon
chr7:37983819-37983940
Coord A exon
chr7:37980627-37980730
Coord C2 exon
chr7:37979191-37979273
Length
104 bp
Sequences
Splice sites
3' ss Seq
CTCTTTTAATCATCTTACAGATC
3' ss Score
10.36
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
AAAATCTGGTGAATCCTATGAGAAATGCTCCTTGCAGTCAGAAGTATAAACCCATTGACTACAAACATCTATGTGAACTCACAGCAGCAGAAAAAGTGGCATCCACAAAAATTCAATTTAAG
Seq A exon
ATCAAAAAAGTGGAGCAAATTTCAAAAATTAACAAAGAGCAAATGCTACTGAAACAGCATTGCCAGGTGTGGTGGCGAGAGTATAAAAGACTTAGTGAGAACAG
Seq C2 exon
GGAAAAAGCAGAAGCAGAAATACAGACTCTTCTTGATGAAGGAAGTCATAAGTATGACTTTTTTTTGGATATGTGGGACTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012555-'3-5,'3-4,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.024 A=0.000 C2=0.034
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGAATCCTATGAGAAATGCTCC
R:
TCATCAAGAAGAGTCTGTATTTCTGC
Band lengths:
155-259
Functional annotations
There are 0 annotated functions for this event