RnoEX0017651 @ rn6
Exon Skipping
Gene
ENSRNOG00000057740 | Ccdc148
Description
coiled-coil domain containing 148 [Source:RGD Symbol;Acc:1561169]
Coordinates
chr3:45112839-45132400:-
Coord C1 exon
chr3:45132279-45132400
Coord A exon
chr3:45117417-45117520
Coord C2 exon
chr3:45112839-45112921
Length
104 bp
Sequences
Splice sites
3' ss Seq
CCGTTCTCCTCTAAATGCAGATC
3' ss Score
8.22
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
ATATCCTGGCAGTCCATATGAAAGGTGGGATGAAGAACTCTAGGTATAAGCCGGCAGACTACCAGCAGTTACGTGCCTTAACCGAAGCCACGAAGTCAGCATCTGCTTCCTCAGAGCAGAAG
Seq A exon
ATCAGAAAAGCCATGGAGACATCAAGGGCGGCTAAAGAGCAGATGCTGATCAAGCAACACAAGCAGGTGTGGTGGCAGGAACAGGAGAGGCTGAAGGGGATCAG
Seq C2 exon
ATGTAAATTGGAGTCTGAAATAAGATCTCGTCTCAATGAGGAGAGCATTGGAGATGAATGTTTTTGTGAGCTTATGAATTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057740-'8-13,'8-11,9-13
Average complexity
S
Mappability confidence:
78%=100=60%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.419 A=0.371 C2=0.000
Domain overlap (PFAM):
C1:
PF048228=Takusan=FE(72.7=100)
A:
PF048228=Takusan=PD(9.1=14.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTGGCAGTCCATATGAAAGG
R:
TAAGCTCACAAAAACATTCATCTCCA
Band lengths:
194-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]