MmuALTD0002651-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000036641 | Ccdc148
Description
coiled-coil domain containing 148 [Source:MGI Symbol;Acc:MGI:3039583]
Coordinates
chr2:59009082-59017637:-
Coord C1 exon
chr2:59017544-59017637
Coord A exon
NA
Coord C2 exon
chr2:59009082-59009185
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTCTGC
5' ss Score
5.38
3' ss Seq
TGGTTCTCCTCTAAATGTAGCTC
3' ss Score
5.64
Exon sequences
Seq C1 exon
ATATCCTGGCAGTCCATATGAAAGATGGAACTAGGAGCTCCCGGTATAAGCCGGTGGACTACCAGCAGTTACGGGCCCTAACCGAAGCCACAAG
Seq A exon
NA
Seq C2 exon
CTCCAAAAAGCCATAGAGACGTCAAGGGCTGCGAAAGAGCAGATGCTGATCAAGCAACACAAGCAGGTGTGGTGGCAGGAACAGGAGAGGCTGAAGGGGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036641-3-5,4-5-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTAACCGAAGCCACAAG
R:
CCTTCAGCCTCTCCTGTTCCT
Band lengths:
117-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types