GgaEX0018968 @ galGal3
Exon Skipping
Gene
ENSGALG00000012555 | CCDC148
Description
NA
Coordinates
chr7:37978498-37979273:-
Coord C1 exon
chr7:37979191-37979273
Coord A exon
chr7:37978866-37979029
Coord C2 exon
chr7:37978498-37978593
Length
164 bp
Sequences
Splice sites
3' ss Seq
TATGTTTCATTTGCATATAGAGC
3' ss Score
5.44
5' ss Seq
CAGGTTGGC
5' ss Score
5.52
Exon sequences
Seq C1 exon
GGAAAAAGCAGAAGCAGAAATACAGACTCTTCTTGATGAAGGAAGTCATAAGTATGACTTTTTTTTGGATATGTGGGACTTGG
Seq A exon
AGCATAAATTGTCACAGGAGCGGGATGCTTACCAAACAGATACTGTGGCTCCTATCTGGCAACTAAGAGAGAATTTGAAATTCTGGCTGACTGAAATGCAGCATTATGTCACAGAAGACTCATCTCTGAGAAACAAGTTCAGTCTAGCTGAGAAGTTACAGCAG
Seq C2 exon
ATTGAATCTGTGAAGAAAGAATGGAAAACAAATTTGGAATTTCTTAACCTTGAAAGTCTGGCTTTGGAAAGAGAGCTTCAAGACTACAAAATAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012555_CASSETTE3
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.034 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAAAAGCAGAAGCAGAAATACAGA
R:
TCTATTTTGTAGTCTTGAAGCTCTCT
Band lengths:
178-342
Functional annotations
There are 0 annotated functions for this event