BtaEX0007386 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004267 | CCDC148
Description
coiled-coil domain containing 148 [Source:HGNC Symbol;Acc:HGNC:25191]
Coordinates
chr2:38109693-38112625:+
Coord C1 exon
chr2:38109693-38109775
Coord A exon
chr2:38109972-38110123
Coord C2 exon
chr2:38112530-38112625
Length
152 bp
Sequences
Splice sites
3' ss Seq
TTGATTTTGTTTCACCATAGAAC
3' ss Score
8.76
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
ATACAAAATGGAATCTGAAATAAAATCCTTATTCAGTGAAGAGAACATTGGAAATGAATGTCTTTCTGACCTTATGAATTTTG
Seq A exon
AACAGGAGTTATCAGAACAATGGTGCACATATCTTAAAAATGTAATAAATCCTATTCAGCAATTGAGAGAAGATCTAAAATACAGACAGCATCACATTTCACAGTATTCACACTCACACAGTGAATCTAACTCTATGAAAGTATTGGAAGAG
Seq C2 exon
GTTGACTTCGTGAAGAAACAATTGAAAGCTGTCTATGAACAACTTAGGCTAGAGCAACAGGAAATAGAAAATTATCTTTCAGACTGGAGCATGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004267-'9-9,'9-7,10-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.000
Domain overlap (PFAM):
C1:
PF0070316=Glyco_hydro_2=PD(15.9=58.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTATTCAGTGAAGAGAACATTGG
R:
TTTCATGCTCCAGTCTGAAAGA
Band lengths:
154-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development