BtaALTA0006301-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000017866 | CD36
Description
Bos taurus CD36 molecule (thrombospondin receptor) (CD36), transcript variant 1, mRNA. [Source:RefSeq mRNA;Acc:NM_001278621]
Coordinates
chr4:40614656-40616250:-
Coord C1 exon
chr4:40616165-40616250
Coord A exon
chr4:40614704-40614709
Coord C2 exon
chr4:40614656-40614703
Length
6 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
TGATCTCCTTTTAATGACAGAAC
3' ss Score
5.45
Exon sequences
Seq C1 exon
GTTACCACTGATTAGAAGAACTGACTCCTTCTAAGACTCATCAGATCGTTTACTGTAAAAACTGTATCTTTCTAATTGTGAAAAAG
Seq A exon
AACCAG
Seq C2 exon
ACCTCTTGGCAACCACTTTCATCAGACCCGGGAGTTGGAAAGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017866-12-12,12-11-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0113016=CD36=PU(6.2=70.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCTTCTAAGACTCATCAGATCGT
R:
TTCTTTCCAACTCCCGGGTCT
Band lengths:
107-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development