Special

MmuALTA0003603-1/2 @ mm9

Alternative 3'ss

Gene
ENSMUSG00000002944 | Cd36
Description
CD36 antigen [Source:MGI Symbol;Acc:MGI:107899]
Coordinates
chr5:17334593-17335367:-
Coord C1 exon
chr5:17335274-17335367
Coord A exon
NA
Coord C2 exon
chr5:17334593-17334799
Length
0 bp
Sequences
Splice sites
5' ss Seq
TAGGTACGT
5' ss Score
8.17
3' ss Seq
TGACCTCTTTCTAATAGTAGAAC
3' ss Score
4.3
Exon sequences
Seq C1 exon
GTAGTTTACAAATGATTTGAAGTGCTGATCCTTTCAGAGTCTCAACAGATTATTTCTTAAACAGCTCATACATTGCTGTTTATGCATGAATTAG
Seq A exon
NA
Seq C2 exon
AACCGGGCCACGTAGAAAACACTGTGATTGTACCTGGGAGTTGGCGAGAAAACCAGTGCTCTCCCTTGATTCTGCTGCACGAGGAGAATGGGCTGTGATCGGAACTGTGGGCTCATTGCTGGAGCTGTTATTGGTGCAGTCCTGGCTGTGTTTGGAGGCATTCTCATGCCAGTCGGAGACATGCTTATTGAGAAGACAATCAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002944-7-7,7-6-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact





	

	
5' UTR





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=NA A=NA C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NA

							
A:
NA

							
C2:
PF0113016=CD36=PU(6.2=70.0)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000126300





     
                   









    
Main Skipping Isoform:
ENSMUSP00000080974





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000131832, ENSMUSP00000133008
  



Associated events






Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr7:80275966-80275967 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr4:40614656-40614709 
HIGH PSI
BtaALTA0006301-2/2
(CD36)
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
chr1:12107534-12107535 
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
ACAGCTCATACATTGCTGTTTATGC

				
R: 
GGGAGAGCACTGGTTTTCTCG

				
Band lengths: 
99-102

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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