BtaALTA0006394-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000005293 | CDC25C
Description
Bos taurus cell division cycle 25 homolog C (S. pombe) (CDC25C), mRNA. [Source:RefSeq mRNA;Acc:NM_001097996]
Coordinates
chr7:51343151-51344138:-
Coord C1 exon
chr7:51343938-51344138
Coord A exon
chr7:51343360-51343380
Coord C2 exon
chr7:51343151-51343359
Length
21 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGC
5' ss Score
8.99
3' ss Seq
TGGGAAGCCTCGTCTCTTAGCTA
3' ss Score
-0.22
Exon sequences
Seq C1 exon
ACTCTTAGGCTGTAACTTCAACCTGCTGAGAGAAGCGGCGAAACCCAAACCTGGCCTATCTGGTCGAGAGGCATAGATGTATGGTTAAATCGCCTCCGTTACCTCAGATTTTTCTTTAGTTCTTCTAGAATCTTCGCTTGTGTCTGATTTCCCTGCTTACTTTCATTCCTCCTGAAGGCAAGTCTCGGACTCAAACCTGCG
Seq A exon
CTAGGTTTTGTTTTTTCTTAG
Seq C2 exon
AACTCGGAGACCATGTCTGCAGAATTCTTCTCATCCAAAAGAGAGGAGGGAAGCCTTGCCTCAGGACCTAGTTTTAGGTCCAATCAGAGGAAGATATTAAACCTGCTCCTTGAGAGAGATGCTTCCTTTTCCATCAGTTCAGATCTCCCTACAACTCCAGTGGAGAAGAAACTTTTTGGTGACTCTGCAAACCTAAGCATTTTGTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005293-4-1,4-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.152
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGGCAAGTCTCGGACTCA
R:
AACTAGGTCCTGAGGCAAGGC
Band lengths:
102-123
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development