BtaALTA0006444-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000009736 | CDC42BPG
Description
CDC42 binding protein kinase gamma (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:29829]
Coordinates
chr29:43693866-43696730:-
Coord C1 exon
chr29:43696478-43696730
Coord A exon
chr29:43693954-43693957
Coord C2 exon
chr29:43693866-43693953
Length
4 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
CCCCACTCTCTGTCCCTCAGTCA
3' ss Score
7.4
Exon sequences
Seq C1 exon
CGGACCGACCCGCGGACTGATCGACGGACGGACCGACGGGCGGGCATGCAAGCGACCCGACTCTAGCCCGGGCTCGGGGCTCCGGCCGCAGCCATGGAGCGGCGGCTGCGCGCGCTGGAGCGGCTGGCGCGGGGCGAGGCCGGCGGCGGCCCGGGGCTCGACGGCCTCCTGGATCTGCTGCTGGGGCTGCACCACGAGCTCAGCAGCGCCCCCCTGCGGCGGGAGCGCAATGTGGCGCAGTTCCTGAGCTGGG
Seq A exon
TCAG
Seq C2 exon
TCCCTTCGTAGCAAAGGTGAAAGAGCTGCGGCTGCAGAGAGACGACTTTGAGATCTTGAAAGTGATCGGCCGAGGGGCCTTCGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009736-0-2,0-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0006920=Pkinase=PU(4.9=41.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGTGGCGCAGTTCCTGAG
R:
CCTCGGCCGATCACTTTCAAG
Band lengths:
100-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development