MmuALTA0003678-2/3 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000024769 | Cdc42bpg
Description
CDC42 binding protein kinase gamma (DMPK-like) [Source:MGI Symbol;Acc:MGI:2652845]
Coordinates
chr19:6306456-6309190:+
Coord C1 exon
chr19:6306456-6306875
Coord A exon
chr19:6309126-6309129
Coord C2 exon
chr19:6309130-6309190
Length
4 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
TGTCCGCTCTGTCCCCTCAGCCA
3' ss Score
9.81
Exon sequences
Seq C1 exon
ACCTTCACCTTCAGCCGCGGCTCCCATTGGCCGGCGCGCACCTGCCCGTCCGTCGGGGGCGGGCTTGGAGGGCGGGGCGGGCGACCAGGTGAAGGAGCGCGGGTGGCGACCGAGGAAGGTGACAGCGGGGAGGGCGGGAGGGAGGGGGGAAGCCGCGCAGAACGAGCCACGGGACCACAGACGGACCGCCGGGCGGACGGACGGACGGGGCATGCGGGCGGCCTGGCTCTAGCCCGGGTTTCGGGGCTCCAGCGGCAGCCATGGAGCAGCGGCTGCGTGCGCTGGAGCAGCTGGTACGGGGCGAAGCTGGTGGCAGCCCAGGGCTCGACGGCCTCCTGGATCTGCTGCTGGGGGTGCACCAAGAGCTCAGCAGCGCCCCCCTGCGCCGGGAGCGTAACGTGGCGCAGTTTCTGAGCTGGG
Seq A exon
CCAG
Seq C2 exon
CCCCTTTGTAACAAAAGTGAAAGAGCTGCGTCTACAGAGAGATGACTTTGAGATCTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024769-0-3,0-2,0-1-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0006920=Pkinase=PU(10.5=41.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCACCAAGAGCTCAGCAG
R:
TGTAGACGCAGCTCTTTCACT
Band lengths:
103-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: